Strain Fitness in Variovorax sp. SCN45 around GFF4428

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
65,225	+		GFF4427	0.47	+0.3
65,339	+		GFF4427	0.57	-0.1
65,339	+		GFF4427	0.57	-0.5
65,339	+		GFF4427	0.57	+0.0
65,339	+		GFF4427	0.57	-1.0
65,339	+		GFF4427	0.57	-0.4
65,339	+		GFF4427	0.57	+1.5
65,339	+		GFF4427	0.57	-0.3
65,340	-		GFF4427	0.57	+0.2
65,340	-		GFF4427	0.57	+0.5
65,340	-		GFF4427	0.57	-0.9
65,340	-		GFF4427	0.57	-0.4
65,340	-		GFF4427	0.57	-1.1
65,340	-		GFF4427	0.57	+0.1
65,340	-		GFF4427	0.57	+0.2
65,370	-		GFF4427	0.60	-1.1
65,654	+		GFF4427	0.85	-0.2
65,654	+		GFF4427	0.85	-0.4
65,654	+		GFF4427	0.85	-0.4
65,655	-		GFF4427	0.85	-0.2
65,655	-		GFF4427	0.85	-0.1
65,655	-		GFF4427	0.85	-0.7
65,655	-		GFF4427	0.85	-0.3
65,655	-		GFF4427	0.85	-0.4
65,678	+		GFF4427	0.87	-0.7
65,678	+		GFF4427	0.87	+0.3
65,678	+		GFF4427	0.87	+0.4
65,679	-		GFF4427	0.87	+0.6
65,679	-		GFF4427	0.87	-0.2
65,810	+				-0.8
65,811	-				-0.4
65,811	-				+0.0
65,811	-				+0.3
65,811	-				+0.0
65,817	+				-1.2
65,817	+				-0.1
65,817	+				-0.0
65,817	+				-0.5
65,817	+				-0.5
65,817	+				+1.1
65,818	-				-0.4
65,818	-				-0.3
65,818	-				-0.5
65,818	-				-0.8
65,818	-				-0.9
65,818	-				+0.3
65,818	-				-3.1
65,818	-				+0.2
65,818	-				-1.9
65,818	-				+0.3
65,818	-				-1.0
65,818	-				+0.0
65,818	-				-0.5
65,818	-				-0.2
65,818	-				-0.4
65,880	+				-0.5
65,880	+				+0.1
65,880	+				-0.7
65,880	+				-0.2
65,880	+				+0.3
65,880	+				-0.0
65,880	+				-0.5
65,880	+				-0.1
65,880	+				-0.7
65,880	+				+0.1
65,880	+				-0.5
65,880	+				-0.2
65,880	+				+0.5
65,880	+				+1.1
65,880	+				-1.2
65,880	+				-0.8
65,880	+				+1.0
65,880	+				-0.6
65,880	+				-0.9
65,880	+				-0.1
65,880	+				+0.4
65,880	+				+0.9
65,880	+				+0.7
65,880	+				-0.7
65,880	+				-0.1
65,880	+				-0.1
65,880	+				+1.1
65,880	+				+0.2
65,880	+				+0.2
65,880	+				+0.3
65,880	+				-0.7
65,880	+				+0.3
65,880	+				-0.8
65,880	+				+0.9
65,880	+				-0.1
65,880	+				-0.4
65,880	+				-1.4
65,880	+				+0.2
65,880	+				-0.4
65,880	+				-1.5
65,880	+				+1.6
65,880	+				-1.3
65,881	-				-0.1
65,881	-				-0.5
65,881	-				-0.2
65,881	-				-1.3
65,881	-				+0.2
65,881	-				-0.3
65,881	-				+0.4
65,881	-				-0.5
65,881	-				-0.0
65,881	-				+0.0
65,881	-				-1.9
65,881	-				-0.1
65,881	-				-1.8
65,881	-				-0.1
65,881	-				-0.1
65,881	-				-0.2
65,881	-				-1.5
65,881	-				+0.2
65,881	-				-0.3
65,881	-				+0.5
65,881	-				+0.3
65,882	+				-0.9
65,882	+				-0.4
65,882	+				+0.4
65,882	+				+0.3
65,882	+				+0.4
65,882	+				+0.3
65,882	+				-0.7
65,882	+				-0.7
65,882	+				+0.8
65,882	+				+0.1
65,882	+				+1.1
65,882	+				+0.3
65,882	+				+0.1
65,882	+				+0.2
65,882	+				-1.0
65,882	+				-1.6
65,882	+				-0.3
65,882	+				-0.1
65,882	+				-0.7
65,882	+				-2.1
65,882	+				+0.3
65,882	+				-0.2
65,882	+				-0.4
65,882	+				-0.0
65,882	+				-0.6
65,882	+				+0.9
65,882	+				-0.9
65,882	+				-1.6
65,882	+				-0.2
65,882	+				+0.6
65,882	+				-0.4
65,882	+				-2.1
65,882	+				-0.2
65,882	+				+0.1
65,882	+				-1.4
65,882	+				+1.6
65,882	+				+0.9
65,882	+				-0.6
65,883	-				+0.6
65,883	-				-0.1
65,883	-				-0.4
65,883	-				-0.6
65,883	-				-0.8
65,883	-				+0.4
65,883	-				-0.8
65,883	-				+0.3
65,883	-				-0.7
65,883	-				-1.2
65,883	-				+0.4
65,883	-				-0.2
65,883	-				-0.1
65,883	-				-0.4
65,883	-				-0.5
65,883	-				-0.4
65,883	-				+0.7
65,883	-				-0.1
65,883	-				-0.7
65,883	-				-0.3
65,883	-				-0.3
65,883	-				-0.4
65,883	-				+0.0
65,883	-				+0.4
65,883	-				+0.1
65,883	-				+0.1
65,883	-				-0.6
65,883	-				+0.0
65,883	-				-0.2
65,883	-				-0.4
65,883	-				-0.1
65,883	-				+0.3
65,883	-				+0.4
65,883	-				+0.8
65,883	-				+0.6
65,883	-				-0.0
65,883	-				-0.5
65,883	-				+1.5
65,883	-				-1.4
65,883	-				+0.2
65,883	-				+0.6
65,883	-				-0.4
65,883	-				+0.6
65,883	-				-2.4
65,883	-				-1.0
65,883	-				+0.5
65,883	-				-0.7
65,884	+				+0.4
65,884	+				-0.7
65,884	+				-0.1
65,884	+				+0.5
65,884	+				+0.1
65,884	+				+1.6
65,884	+				+0.3
65,884	+				-0.2
65,884	+				+0.6
65,884	+				+0.8
65,884	+				-0.6
65,884	+				-1.2
65,884	+				-0.8
65,884	+				-1.1
65,884	+				-0.6
65,884	+				+0.2
65,884	+				-0.4
65,884	+				-0.2
65,884	+				-1.4
65,884	+				+0.1
65,884	+				-0.1
65,884	+				+0.4
65,884	+				-0.4
65,884	+				-0.2
65,884	+				-0.0
65,884	+				-0.8
65,884	+				+2.1
65,884	+				+0.2
65,884	+				+0.3
65,884	+				-0.5
65,884	+				-0.5
65,884	+				+0.2
65,884	+				-1.2
65,884	+				+3.2
65,884	+				+0.8
65,884	+				-0.2
65,884	+				-1.9
65,884	+				-0.9
65,884	+				+0.1
65,884	+				+0.1
65,884	+				+0.3
65,884	+				-0.3
65,884	+				+0.1
65,884	+				-0.8
65,884	+				-1.2
65,884	+				-1.3
65,884	+				-0.4
65,884	+				-0.2
65,884	+				+0.3
65,884	+				-0.7
65,884	+				-1.7
65,884	+				+1.0
65,884	+				-0.2
65,884	+				-0.3
65,884	+				-0.2
65,884	+				-0.7
65,884	+				+1.6
65,884	+				+1.2
65,884	+				+0.8
65,884	+				+0.1
65,884	+				+0.2
65,884	+				-0.1
65,884	+				-0.9
65,884	+				-1.3
65,884	+				-1.5
65,884	+				-0.7
65,884	+				+0.1
65,884	+				+0.1
65,884	+				+0.1
65,884	+				+0.1
65,884	+				-0.3
65,884	+				-0.8
65,884	+				-0.5
65,884	+				+0.2
65,884	+				-0.1
65,884	+				+0.3
65,884	+				-0.7
65,884	+				-0.4
65,884	+				-0.3
65,884	+				-0.7
65,884	+				+1.6
65,884	+				-1.7
65,884	+				+0.5
65,884	+				+0.9
65,884	+				-0.3
65,884	+				-0.7
65,885	-				+0.1
65,885	-				+0.2
65,885	-				-0.3
65,885	-				-0.2
65,885	-				+0.6
65,885	-				-0.2
65,885	-				-0.6
65,885	-				-0.3
65,885	-				-0.1
65,885	-				-0.6
65,885	-				-0.5
65,885	-				-0.7
65,885	-				-1.1
65,885	-				-0.7
65,885	-				-0.6
65,885	-				-0.3
65,885	-				+0.8
65,885	-				+0.7
65,885	-				-0.3
65,885	-				-0.2
65,885	-				-0.3
65,885	-				-1.7
65,885	-				-0.2
65,885	-				-0.6
65,885	-				+0.5
65,885	-				-0.6
65,885	-				-0.5
65,885	-				-0.4
65,885	-				-0.5
65,885	-				+1.3
65,885	-				+0.2
65,885	-				+1.4
65,885	-				+0.4
65,885	-				+0.4
65,885	-				-0.1
65,885	-				-1.1
65,885	-				-0.4
65,885	-				-0.5
65,885	-				+0.4
65,885	-				-0.1
65,885	-				-0.6
65,885	-				-0.5
65,885	-				+0.4
65,885	-				+0.6
65,885	-				+0.2
65,885	-				-0.2
65,885	-				-1.1
65,885	-				+0.1
65,885	-				-0.5
65,885	-				+1.4
65,886	+				+0.4
65,886	+				-0.6
65,886	+				-0.5
65,886	+				+0.5
65,886	+				+0.1
65,886	+				+0.5
65,886	+				-0.3
65,886	+				-0.4
65,886	+				-1.1
65,886	+				-0.7
65,886	+				+0.0
65,886	+				-1.4
65,886	+				-0.4
65,886	+				-0.0
65,886	+				-0.3
65,886	+				-1.0
65,886	+				+1.0
65,886	+				+0.1
65,886	+				-0.1
65,886	+				+0.4
65,886	+				-0.6
65,886	+				+1.9
65,886	+				+0.2
65,886	+				-0.4
65,886	+				-0.0
65,886	+				+0.6
65,886	+				+0.8
65,886	+				-0.2
65,886	+				-0.9
65,886	+				+0.5
65,886	+				+0.7
65,886	+				+0.9
65,886	+				-0.4
65,886	+				-0.3
65,886	+				-0.6
65,886	+				+0.3
65,886	+				-0.1
65,886	+				-0.4
65,886	+				+0.3
65,886	+				-0.4
65,886	+				-0.4
65,886	+				-0.6
65,886	+				-1.4
65,886	+				-0.0
65,886	+				-0.2
65,886	+				-2.2
65,886	+				-1.1
65,886	+				+0.2
65,886	+				-0.7
65,886	+				-0.8
65,886	+				+0.6
65,886	+				+0.6
65,886	+				+0.1
65,886	+				+0.1
65,886	+				+0.0
65,886	+				-0.1
65,886	+				+0.1
65,886	+				+0.4
65,886	+				+0.3
65,886	+				-1.1
65,886	+				-0.4
65,886	+				+1.1
65,886	+				+0.3
65,886	+				+0.2
65,886	+				-0.7
65,886	+				-0.7
65,886	+				-0.5
65,886	+				+0.0
65,886	+				-0.4
65,886	+				-1.8
65,886	+				-0.0
65,886	+				+1.2
65,886	+				+1.6
65,886	+				+0.3
65,886	+				+0.0
65,886	+				-0.1
65,886	+				-2.2
65,886	+				-0.0
65,886	+				-0.2
65,886	+				+1.6
65,886	+				-0.9
65,886	+				+0.3
65,886	+				-0.7
65,886	+				+0.2
65,886	+				+0.4
65,886	+				-0.1
65,886	+				+0.2
65,886	+				+1.2
65,886	+				-0.1
65,886	+				-0.1
65,886	+				-1.0
65,887	-				+0.1
65,887	-				+0.3
65,887	-				-0.5
65,887	-				-0.2
65,887	-				+0.3
65,887	-				-0.2
65,887	-				+0.3
65,887	-				-0.9
65,887	-				-0.2
65,887	-				-0.0
65,887	-				-0.2
65,887	-				+0.1
65,887	-				-0.7
65,887	-				+0.6
65,887	-				-0.8
65,887	-				+0.1
65,887	-				-0.9
65,887	-				-0.0
65,887	-				-0.2
65,887	-				-0.1
65,887	-				+0.4
65,887	-				+0.6
65,887	-				-0.8
65,887	-				-0.2
65,887	-				-0.1
65,887	-				-1.9
65,887	-				+0.4
65,887	-				-1.2
65,887	-				+0.1
65,887	-				-0.6
65,887	-				+0.5
65,887	-				-0.1
65,887	-				-1.4
65,887	-				-0.4
65,887	-				-0.2
65,887	-				-0.1
65,887	-				-0.5
65,887	-				-0.2
65,887	-				-2.1
65,887	-				-0.6
65,887	-				-0.1
65,887	-				-0.4
65,887	-				-0.2
65,887	-				+0.8
65,887	-				-0.5
65,887	-				-0.4
65,887	-				-0.2
65,887	-				-0.2
65,887	-				+0.2
65,887	-				-0.2
65,887	-				+0.4
65,887	-				-0.4
65,887	-				+0.1
65,887	-				-0.4
65,887	-				-0.2
65,887	-				+0.4
65,887	-				+0.1
65,887	-				-0.4
65,887	-				-0.4
65,887	-				+1.2
65,887	-				-0.5
65,887	-				+0.0
65,887	-				-0.1
65,888	+				-0.7
65,888	+				-0.2
65,888	+				+0.6
65,888	+				-0.4
65,888	+				+0.1
65,888	+				-0.4
65,888	+				-1.9
65,888	+				+0.1
65,888	+				+0.1
65,888	+				-0.8
65,888	+				-2.1
65,888	+				+0.1
65,888	+				-0.2
65,888	+				-0.5
65,888	+				+0.0
65,888	+				-0.3
65,888	+				+0.1
65,888	+				-0.8
65,888	+				-0.1
65,888	+				-0.4
65,888	+				+0.5
65,888	+				-0.2
65,888	+				+0.5
65,888	+				-1.1
65,888	+				-0.0
65,888	+				+1.2
65,888	+				-0.1
65,888	+				-0.4
65,888	+				-1.5
65,888	+				-0.1
65,888	+				+1.6
65,888	+				-0.2
65,888	+				+0.9
65,888	+				-0.0
65,888	+				+1.2
65,888	+				+0.5
65,888	+				+1.1
65,888	+				+0.2
65,888	+				-0.5
65,888	+				-0.4
65,888	+				+0.7
65,888	+				-0.7
65,888	+				-0.4
65,888	+				-2.2
65,888	+				-1.4
65,888	+				-0.5
65,888	+				+0.1
65,888	+				-0.9
65,888	+				+0.6
65,888	+				+0.5
65,888	+				+0.4
65,888	+				-0.0
65,888	+				-0.2
65,888	+				+0.7
65,888	+				-0.7
65,888	+				-0.5
65,889	-				-0.6
65,889	-				+0.1
65,889	-				-0.1
65,889	-				-0.0
65,889	-				-0.6
65,889	-				-0.1
65,889	-				-0.0
65,889	-				-0.2
65,889	-				-0.9
65,889	-				-0.5
65,889	-				-1.1
65,889	-				-0.2
65,889	-				+1.2
65,889	-				+0.1
65,889	-				-0.0
65,889	-				-0.5
65,889	-				-0.6
65,889	-				-0.2
65,889	-				+0.3
65,889	-				-0.6
65,889	-				+0.2
65,889	-				-0.2
65,889	-				-0.3
65,889	-				-0.3
65,889	-				-0.0
65,889	-				-0.4
65,889	-				+0.4
65,889	-				-1.3
65,889	-				-0.2
65,889	-				+0.4
65,889	-				+0.1
65,889	-				-0.3
65,889	-				+0.8
65,975	+				-0.1
65,976	-				-0.6
67,365	-				-0.4
67,404	+				-0.8
67,405	-				-0.6
67,424	+				-1.2
67,424	+				+0.4
67,424	+				+0.8
67,425	-				+0.9
67,425	-				+0.1
67,425	-				-0.1
67,477	+				-0.6
67,478	-				+0.3
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