Strain Fitness in Variovorax sp. SCN45 around GFF4342

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4341 and GFF4342 are separated by 114 nucleotidesGFF4342 and GFF4343 are separated by 39 nucleotides GFF4341 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 264,577 to 265,731 GFF4341 GFF4342 - no description, at 265,846 to 265,989 GFF4342 GFF4343 - Acyl-CoA dehydrogenase MSMEG_2070, at 266,029 to 267,276 GFF4343 Position (kb) 265 266Strain fitness (log2 ratio) -1 0 1at 265.241 kb on + strand, within GFF4341at 266.036 kb on - strandat 266.972 kb on - strand, within GFF4343

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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265,241 + GFF4341 0.57 +0.2
266,036 - -0.5
266,972 - GFF4343 0.76 -0.2

Or see this region's nucleotide sequence