Strain Fitness in Variovorax sp. SCN45 around GFF4235

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4233 and GFF4234 overlap by 4 nucleotidesGFF4234 and GFF4235 overlap by 4 nucleotidesGFF4235 and GFF4236 are separated by 14 nucleotidesGFF4236 and GFF4237 are separated by 42 nucleotides GFF4233 - no description, at 144,654 to 145,064 GFF4233 GFF4234 - hypothetical protein, at 145,061 to 145,852 GFF4234 GFF4235 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 145,849 to 146,667 GFF4235 GFF4236 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 146,682 to 147,584 GFF4236 GFF4237 - no description, at 147,627 to 148,724 GFF4237 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1at 145.074 kb on + strandat 145.075 kb on - strandat 145.906 kb on + strandat 145.906 kb on + strandat 145.907 kb on - strandat 145.907 kb on - strandat 145.907 kb on - strandat 145.907 kb on - strandat 146.075 kb on - strand, within GFF4235at 147.087 kb on + strand, within GFF4236

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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145,074 + -0.1
145,075 - -2.5
145,906 + +0.1
145,906 + -1.0
145,907 - -0.2
145,907 - -0.8
145,907 - +0.2
145,907 - +0.3
146,075 - GFF4235 0.28 +0.9
147,087 + GFF4236 0.45 +0.9

Or see this region's nucleotide sequence