Strain Fitness in Variovorax sp. SCN45 around GFF413

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF412 and GFF413 overlap by 4 nucleotidesGFF413 and GFF414 are separated by 72 nucleotides GFF412 - Transcription-repair coupling factor, at 445,906 to 449,388 GFF412 GFF413 - Phosphoserine phosphatase (EC 3.1.3.3), at 449,385 to 450,098 GFF413 GFF414 - Malate dehydrogenase (EC 1.1.1.37), at 450,171 to 451,241 GFF414 Position (kb) 449 450 451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 448.513 kb on + strand, within GFF412at 448.513 kb on + strand, within GFF412at 448.513 kb on + strand, within GFF412at 448.513 kb on + strand, within GFF412at 448.513 kb on + strand, within GFF412at 448.513 kb on + strand, within GFF412at 448.513 kb on + strand, within GFF412at 448.514 kb on - strand, within GFF412at 448.514 kb on - strand, within GFF412at 448.514 kb on - strand, within GFF412at 448.514 kb on - strand, within GFF412at 448.514 kb on - strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.660 kb on + strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.661 kb on - strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.666 kb on + strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.667 kb on - strand, within GFF412at 448.759 kb on + strand, within GFF412at 448.759 kb on + strand, within GFF412at 448.759 kb on + strand, within GFF412at 448.760 kb on - strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.763 kb on + strand, within GFF412at 448.764 kb on - strand, within GFF412at 448.764 kb on - strand, within GFF412at 448.764 kb on - strand, within GFF412at 448.764 kb on - strand, within GFF412at 448.764 kb on - strand, within GFF412at 448.764 kb on - strand, within GFF412at 448.852 kb on + strand, within GFF412at 448.852 kb on + strand, within GFF412at 448.852 kb on + strand, within GFF412at 448.852 kb on + strand, within GFF412at 448.852 kb on + strand, within GFF412at 448.852 kb on + strand, within GFF412at 448.853 kb on - strand, within GFF412at 448.853 kb on - strand, within GFF412at 448.853 kb on - strand, within GFF412at 448.853 kb on - strand, within GFF412at 448.929 kb on + strand, within GFF412at 448.929 kb on + strand, within GFF412at 448.929 kb on + strand, within GFF412at 448.929 kb on + strand, within GFF412at 448.930 kb on - strand, within GFF412at 448.975 kb on + strand, within GFF412at 448.975 kb on + strand, within GFF412at 448.975 kb on + strand, within GFF412at 448.976 kb on - strand, within GFF412at 448.976 kb on - strand, within GFF412at 448.976 kb on - strand, within GFF412at 449.008 kb on + strand, within GFF412at 449.008 kb on + strand, within GFF412at 449.008 kb on + strand, within GFF412at 449.008 kb on + strand, within GFF412at 449.008 kb on + strand, within GFF412at 449.008 kb on + strand, within GFF412at 449.009 kb on - strand, within GFF412at 449.009 kb on - strand, within GFF412at 449.009 kb on - strand, within GFF412at 449.009 kb on - strand, within GFF412at 449.009 kb on - strand, within GFF412at 449.014 kb on + strand, within GFF412at 449.187 kb on + strandat 449.187 kb on + strandat 449.187 kb on + strandat 449.187 kb on + strandat 449.187 kb on + strandat 449.188 kb on - strandat 449.188 kb on - strandat 449.188 kb on - strandat 449.188 kb on - strandat 449.188 kb on - strandat 449.188 kb on - strandat 449.188 kb on - strandat 449.188 kb on - strandat 449.195 kb on - strandat 450.088 kb on + strandat 450.089 kb on - strandat 450.199 kb on - strandat 450.199 kb on - strandat 450.222 kb on + strandat 450.223 kb on - strandat 450.223 kb on - strandat 450.223 kb on - strandat 450.223 kb on - strandat 450.223 kb on - strandat 450.223 kb on - strandat 450.345 kb on + strand, within GFF414at 450.345 kb on + strand, within GFF414at 450.345 kb on + strand, within GFF414at 450.345 kb on + strand, within GFF414at 450.346 kb on - strand, within GFF414at 450.346 kb on - strand, within GFF414at 450.346 kb on - strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.558 kb on + strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414at 450.559 kb on - strand, within GFF414

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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448,513 + GFF412 0.75 +0.3
448,513 + GFF412 0.75 +0.1
448,513 + GFF412 0.75 +0.8
448,513 + GFF412 0.75 -0.1
448,513 + GFF412 0.75 +0.2
448,513 + GFF412 0.75 -0.1
448,513 + GFF412 0.75 -0.3
448,514 - GFF412 0.75 -0.7
448,514 - GFF412 0.75 +1.2
448,514 - GFF412 0.75 -0.2
448,514 - GFF412 0.75 +0.2
448,514 - GFF412 0.75 -0.7
448,660 + GFF412 0.79 +0.0
448,660 + GFF412 0.79 -0.7
448,660 + GFF412 0.79 +0.6
448,660 + GFF412 0.79 -0.4
448,660 + GFF412 0.79 +0.7
448,660 + GFF412 0.79 -0.1
448,660 + GFF412 0.79 -0.5
448,660 + GFF412 0.79 -0.2
448,660 + GFF412 0.79 -0.2
448,660 + GFF412 0.79 -0.8
448,660 + GFF412 0.79 -0.5
448,660 + GFF412 0.79 +0.1
448,660 + GFF412 0.79 -0.6
448,660 + GFF412 0.79 +0.0
448,660 + GFF412 0.79 -0.1
448,660 + GFF412 0.79 +1.9
448,660 + GFF412 0.79 -0.1
448,660 + GFF412 0.79 -0.6
448,661 - GFF412 0.79 +1.2
448,661 - GFF412 0.79 +0.1
448,661 - GFF412 0.79 -0.1
448,661 - GFF412 0.79 +0.3
448,661 - GFF412 0.79 -0.4
448,661 - GFF412 0.79 -0.2
448,661 - GFF412 0.79 +0.3
448,661 - GFF412 0.79 +1.2
448,661 - GFF412 0.79 +0.8
448,661 - GFF412 0.79 +1.0
448,661 - GFF412 0.79 -0.3
448,661 - GFF412 0.79 -0.1
448,661 - GFF412 0.79 -1.0
448,661 - GFF412 0.79 -1.4
448,661 - GFF412 0.79 -0.4
448,661 - GFF412 0.79 -0.1
448,661 - GFF412 0.79 -0.3
448,661 - GFF412 0.79 -0.2
448,661 - GFF412 0.79 -0.1
448,661 - GFF412 0.79 +0.4
448,661 - GFF412 0.79 +0.3
448,661 - GFF412 0.79 -0.3
448,661 - GFF412 0.79 -0.2
448,661 - GFF412 0.79 +0.0
448,666 + GFF412 0.79 +0.4
448,666 + GFF412 0.79 -0.0
448,666 + GFF412 0.79 +0.4
448,666 + GFF412 0.79 -0.2
448,666 + GFF412 0.79 -0.4
448,666 + GFF412 0.79 -0.9
448,666 + GFF412 0.79 -0.0
448,666 + GFF412 0.79 -0.8
448,666 + GFF412 0.79 -1.1
448,666 + GFF412 0.79 +0.4
448,666 + GFF412 0.79 +0.2
448,667 - GFF412 0.79 -0.8
448,667 - GFF412 0.79 +0.1
448,667 - GFF412 0.79 +0.4
448,667 - GFF412 0.79 -0.5
448,667 - GFF412 0.79 -0.1
448,667 - GFF412 0.79 -0.0
448,667 - GFF412 0.79 -0.6
448,667 - GFF412 0.79 +1.2
448,759 + GFF412 0.82 +0.8
448,759 + GFF412 0.82 -0.0
448,759 + GFF412 0.82 -0.0
448,760 - GFF412 0.82 +0.7
448,763 + GFF412 0.82 -0.6
448,763 + GFF412 0.82 +1.2
448,763 + GFF412 0.82 +0.7
448,763 + GFF412 0.82 -0.4
448,763 + GFF412 0.82 -0.1
448,763 + GFF412 0.82 +0.7
448,763 + GFF412 0.82 -0.6
448,763 + GFF412 0.82 +1.2
448,763 + GFF412 0.82 -1.2
448,763 + GFF412 0.82 +0.4
448,763 + GFF412 0.82 +0.0
448,763 + GFF412 0.82 -0.4
448,764 - GFF412 0.82 -0.1
448,764 - GFF412 0.82 +0.3
448,764 - GFF412 0.82 +0.0
448,764 - GFF412 0.82 -0.5
448,764 - GFF412 0.82 +0.1
448,764 - GFF412 0.82 -0.2
448,852 + GFF412 0.85 +0.2
448,852 + GFF412 0.85 -0.9
448,852 + GFF412 0.85 -0.2
448,852 + GFF412 0.85 -0.3
448,852 + GFF412 0.85 -0.6
448,852 + GFF412 0.85 +0.1
448,853 - GFF412 0.85 -0.0
448,853 - GFF412 0.85 -0.1
448,853 - GFF412 0.85 -0.4
448,853 - GFF412 0.85 +0.3
448,929 + GFF412 0.87 +1.8
448,929 + GFF412 0.87 +0.5
448,929 + GFF412 0.87 -0.0
448,929 + GFF412 0.87 -0.9
448,930 - GFF412 0.87 -2.0
448,975 + GFF412 0.88 -0.8
448,975 + GFF412 0.88 +0.3
448,975 + GFF412 0.88 -0.1
448,976 - GFF412 0.88 -0.9
448,976 - GFF412 0.88 -1.1
448,976 - GFF412 0.88 +0.3
449,008 + GFF412 0.89 +0.8
449,008 + GFF412 0.89 -1.2
449,008 + GFF412 0.89 -0.5
449,008 + GFF412 0.89 +0.4
449,008 + GFF412 0.89 -0.5
449,008 + GFF412 0.89 -0.2
449,009 - GFF412 0.89 +1.2
449,009 - GFF412 0.89 -0.0
449,009 - GFF412 0.89 +0.3
449,009 - GFF412 0.89 -0.1
449,009 - GFF412 0.89 +1.2
449,014 + GFF412 0.89 +0.1
449,187 + -0.6
449,187 + +2.4
449,187 + -0.4
449,187 + +0.2
449,187 + +0.7
449,188 - -0.9
449,188 - +0.4
449,188 - -1.4
449,188 - +0.6
449,188 - +0.4
449,188 - -0.1
449,188 - -0.5
449,188 - -0.1
449,195 - -0.5
450,088 + -0.8
450,089 - -1.0
450,199 - -0.0
450,199 - -0.6
450,222 + +0.0
450,223 - +0.1
450,223 - +0.1
450,223 - -0.2
450,223 - +0.9
450,223 - +0.1
450,223 - -1.0
450,345 + GFF414 0.16 +0.2
450,345 + GFF414 0.16 -0.9
450,345 + GFF414 0.16 -0.8
450,345 + GFF414 0.16 +0.1
450,346 - GFF414 0.16 -0.6
450,346 - GFF414 0.16 -0.8
450,346 - GFF414 0.16 -0.6
450,558 + GFF414 0.36 -0.9
450,558 + GFF414 0.36 -0.1
450,558 + GFF414 0.36 +2.0
450,558 + GFF414 0.36 -0.2
450,558 + GFF414 0.36 -2.1
450,558 + GFF414 0.36 +0.4
450,558 + GFF414 0.36 -1.3
450,558 + GFF414 0.36 -0.4
450,558 + GFF414 0.36 -0.6
450,558 + GFF414 0.36 +0.6
450,558 + GFF414 0.36 +0.2
450,558 + GFF414 0.36 -0.8
450,558 + GFF414 0.36 +1.5
450,558 + GFF414 0.36 +0.9
450,558 + GFF414 0.36 -0.0
450,559 - GFF414 0.36 +0.7
450,559 - GFF414 0.36 +0.2
450,559 - GFF414 0.36 +0.2
450,559 - GFF414 0.36 +0.7
450,559 - GFF414 0.36 -0.8
450,559 - GFF414 0.36 +0.0
450,559 - GFF414 0.36 +2.8
450,559 - GFF414 0.36 -0.6
450,559 - GFF414 0.36 -0.1
450,559 - GFF414 0.36 -2.7
450,559 - GFF414 0.36 +0.0
450,559 - GFF414 0.36 +0.2
450,559 - GFF414 0.36 +0.1

Or see this region's nucleotide sequence