Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3994 and GFF3995 overlap by 19 nucleotides GFF3995 and GFF3996 are separated by 172 nucleotides GFF3996 and GFF3997 are separated by 299 nucleotides
GFF3994 - hypothetical protein, at 195,969 to 196,406
GFF3994
GFF3995 - hypothetical protein, at 196,388 to 197,209
GFF3995
GFF3996 - no description, at 197,382 to 197,504
GFF3996
GFF3997 - Short-chain dehydrogenase/reductase SDR, at 197,804 to 198,511
GFF3997
Position (kb) 197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.385 kb on + strand at 196.385 kb on + strand at 196.385 kb on + strand at 196.385 kb on + strand at 196.385 kb on + strand at 196.385 kb on + strand at 196.385 kb on + strand at 196.386 kb on - strand at 196.386 kb on - strand at 196.386 kb on - strand at 196.386 kb on - strand at 196.386 kb on - strand at 196.386 kb on - strand at 196.386 kb on - strand at 196.391 kb on + strand at 196.392 kb on - strand at 196.392 kb on - strand at 196.392 kb on - strand at 196.392 kb on - strand at 196.497 kb on + strand, within GFF3995 at 196.497 kb on + strand, within GFF3995 at 196.498 kb on - strand, within GFF3995 at 196.498 kb on - strand, within GFF3995 at 196.667 kb on + strand, within GFF3995 at 196.667 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.897 kb on + strand, within GFF3995 at 196.897 kb on + strand, within GFF3995 at 196.900 kb on - strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.940 kb on - strand, within GFF3995 at 196.940 kb on - strand, within GFF3995 at 196.979 kb on - strand, within GFF3995 at 196.979 kb on - strand, within GFF3995 at 196.979 kb on - strand, within GFF3995 at 197.156 kb on + strand at 197.156 kb on + strand at 197.156 kb on + strand at 197.156 kb on + strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.324 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.392 kb on + strand at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.398 kb on - strand, within GFF3996 at 197.398 kb on - strand, within GFF3996 at 197.398 kb on - strand, within GFF3996 at 197.531 kb on + strand at 197.580 kb on + strand at 197.580 kb on + strand at 197.580 kb on + strand at 197.581 kb on - strand at 197.682 kb on - strand at 197.755 kb on - strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 198.266 kb on + strand, within GFF3997 at 198.266 kb on + strand, within GFF3997 at 198.266 kb on + strand, within GFF3997 at 198.266 kb on + strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 196,385 + -0.5 196,385 + +0.3 196,385 + +1.1 196,385 + +0.2 196,385 + +0.3 196,385 + -0.1 196,385 + +0.1 196,386 - +0.4 196,386 - -0.1 196,386 - -0.2 196,386 - +0.1 196,386 - -1.2 196,386 - -0.1 196,386 - -0.4 196,391 + +0.7 196,392 - +1.7 196,392 - +0.5 196,392 - -0.6 196,392 - +0.2 196,497 + GFF3995 0.13 +0.4 196,497 + GFF3995 0.13 -1.4 196,498 - GFF3995 0.13 +0.1 196,498 - GFF3995 0.13 -0.7 196,667 + GFF3995 0.34 -2.4 196,667 + GFF3995 0.34 +0.0 196,805 + GFF3995 0.51 -0.9 196,805 + GFF3995 0.51 +0.5 196,805 + GFF3995 0.51 -0.9 196,805 + GFF3995 0.51 -2.9 196,805 + GFF3995 0.51 -0.8 196,805 + GFF3995 0.51 +0.5 196,805 + GFF3995 0.51 -0.2 196,806 - GFF3995 0.51 +0.4 196,806 - GFF3995 0.51 -0.0 196,806 - GFF3995 0.51 -0.4 196,806 - GFF3995 0.51 -0.3 196,806 - GFF3995 0.51 -1.3 196,806 - GFF3995 0.51 +0.2 196,806 - GFF3995 0.51 +0.0 196,806 - GFF3995 0.51 -0.6 196,806 - GFF3995 0.51 +0.5 196,806 - GFF3995 0.51 -0.0 196,806 - GFF3995 0.51 +1.0 196,897 + GFF3995 0.62 +0.4 196,897 + GFF3995 0.62 -0.0 196,900 - GFF3995 0.62 -0.1 196,939 + GFF3995 0.67 -0.5 196,939 + GFF3995 0.67 +0.9 196,939 + GFF3995 0.67 -1.3 196,939 + GFF3995 0.67 -0.3 196,939 + GFF3995 0.67 -0.3 196,939 + GFF3995 0.67 -1.0 196,940 - GFF3995 0.67 -0.5 196,940 - GFF3995 0.67 +0.3 196,979 - GFF3995 0.72 +0.4 196,979 - GFF3995 0.72 -1.1 196,979 - GFF3995 0.72 +1.3 197,156 + -0.2 197,156 + +0.3 197,156 + +0.6 197,156 + -1.0 197,157 - -1.0 197,157 - +0.4 197,157 - -0.6 197,157 - +0.3 197,157 - -0.1 197,157 - -0.2 197,324 + +1.3 197,358 + -0.1 197,358 + +1.0 197,358 + +0.2 197,358 + +0.1 197,358 + +0.8 197,358 + -0.8 197,358 + -0.1 197,359 - -0.6 197,359 - +0.2 197,359 - +0.9 197,359 - +0.7 197,359 - +0.0 197,392 + -1.1 197,397 + GFF3996 0.12 -0.7 197,397 + GFF3996 0.12 -0.0 197,397 + GFF3996 0.12 +0.3 197,397 + GFF3996 0.12 +0.5 197,397 + GFF3996 0.12 -0.0 197,398 - GFF3996 0.13 -0.1 197,398 - GFF3996 0.13 +1.3 197,398 - GFF3996 0.13 +0.3 197,531 + -1.3 197,580 + -0.9 197,580 + +0.5 197,580 + -0.3 197,581 - +0.9 197,682 - +2.8 197,755 - -0.8 197,832 + -0.6 197,832 + +0.1 197,832 + -1.9 197,832 + -0.0 197,832 + +0.0 197,832 + +0.1 197,832 + -1.0 197,832 + -0.3 197,832 + +0.5 197,832 + +1.2 197,832 + -0.9 197,832 + -1.6 197,833 - +0.0 197,833 - -1.0 197,833 - +0.3 197,833 - +0.5 197,833 - -1.8 197,833 - +0.3 197,833 - -1.2 197,833 - +2.0 197,833 - -0.6 197,833 - +0.3 197,833 - +0.5 197,833 - -0.1 197,833 - +0.2 197,833 - +0.9 197,833 - +2.0 197,833 - -0.2 197,833 - +0.2 197,833 - -0.9 197,833 - -0.2 197,833 - -1.0 197,833 - -1.4 198,266 + GFF3997 0.65 -0.8 198,266 + GFF3997 0.65 -0.5 198,266 + GFF3997 0.65 +0.3 198,266 + GFF3997 0.65 +1.7 198,267 - GFF3997 0.65 -0.2 198,267 - GFF3997 0.65 +0.8 198,267 - GFF3997 0.65 +0.7 198,267 - GFF3997 0.65 -0.3 198,267 - GFF3997 0.65 -0.1 198,267 - GFF3997 0.65 +0.5 198,267 - GFF3997 0.65 -0.5
Or see this region's nucleotide sequence