Strain Fitness in Variovorax sp. SCN45 around GFF3991

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3990 and GFF3991 are separated by 857 nucleotidesGFF3991 and GFF3992 are separated by 157 nucleotidesGFF3992 and GFF3993 are separated by 91 nucleotides GFF3990 - hypothetical protein, at 193,248 to 193,643 GFF3990 GFF3991 - no description, at 194,501 to 194,707 GFF3991 GFF3992 - HNH endonuclease family protein, at 194,865 to 195,428 GFF3992 GFF3993 - no description, at 195,520 to 195,696 GFF3993 Position (kb) 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 193.515 kb on + strand, within GFF3990at 193.515 kb on + strand, within GFF3990at 193.516 kb on - strand, within GFF3990at 193.516 kb on - strand, within GFF3990at 193.516 kb on - strand, within GFF3990at 193.516 kb on - strand, within GFF3990at 193.634 kb on + strandat 193.635 kb on - strandat 193.759 kb on - strandat 193.759 kb on - strandat 193.923 kb on + strandat 193.923 kb on + strandat 193.923 kb on + strandat 193.924 kb on - strandat 193.924 kb on - strandat 193.978 kb on + strandat 193.998 kb on + strandat 194.006 kb on + strandat 194.006 kb on + strandat 194.006 kb on + strandat 194.006 kb on + strandat 194.006 kb on + strandat 194.006 kb on + strandat 194.007 kb on - strandat 194.141 kb on + strandat 194.142 kb on - strandat 194.195 kb on - strandat 194.195 kb on - strandat 194.260 kb on + strandat 194.261 kb on - strandat 194.376 kb on + strandat 194.394 kb on + strandat 194.394 kb on + strandat 194.395 kb on - strandat 194.395 kb on - strandat 194.420 kb on + strandat 194.705 kb on + strandat 194.705 kb on + strandat 194.705 kb on + strandat 194.705 kb on + strandat 194.705 kb on + strandat 194.706 kb on - strandat 194.706 kb on - strandat 194.737 kb on + strandat 194.738 kb on - strandat 194.738 kb on - strandat 194.891 kb on + strandat 194.943 kb on + strand, within GFF3992at 194.943 kb on + strand, within GFF3992at 194.943 kb on + strand, within GFF3992at 195.013 kb on + strand, within GFF3992at 195.151 kb on - strand, within GFF3992at 195.312 kb on + strand, within GFF3992at 195.312 kb on + strand, within GFF3992at 195.312 kb on + strand, within GFF3992at 195.313 kb on - strand, within GFF3992at 195.313 kb on - strand, within GFF3992at 195.313 kb on - strand, within GFF3992at 195.313 kb on - strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.321 kb on + strand, within GFF3992at 195.322 kb on - strand, within GFF3992at 195.322 kb on - strand, within GFF3992at 195.322 kb on - strand, within GFF3992at 195.322 kb on - strand, within GFF3992at 195.322 kb on - strand, within GFF3992at 195.427 kb on - strandat 195.427 kb on - strandat 195.463 kb on + strandat 195.463 kb on + strandat 195.464 kb on - strandat 195.464 kb on - strandat 195.662 kb on - strand, within GFF3993at 195.676 kb on + strand, within GFF3993at 195.676 kb on + strand, within GFF3993at 195.676 kb on + strand, within GFF3993at 195.676 kb on + strand, within GFF3993at 195.677 kb on - strand, within GFF3993at 195.677 kb on - strand, within GFF3993at 195.677 kb on - strand, within GFF3993at 195.677 kb on - strand, within GFF3993at 195.677 kb on - strand, within GFF3993at 195.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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193,515 + GFF3990 0.67 +0.7
193,515 + GFF3990 0.67 +0.0
193,516 - GFF3990 0.68 +0.2
193,516 - GFF3990 0.68 +0.5
193,516 - GFF3990 0.68 +0.1
193,516 - GFF3990 0.68 +0.7
193,634 + -1.4
193,635 - -1.6
193,759 - -2.9
193,759 - -0.0
193,923 + -1.0
193,923 + +1.5
193,923 + -0.0
193,924 - -0.5
193,924 - -0.3
193,978 + -0.8
193,998 + +1.8
194,006 + +0.5
194,006 + +0.5
194,006 + +0.1
194,006 + -0.3
194,006 + +0.3
194,006 + -0.2
194,007 - -0.6
194,141 + +0.1
194,142 - +0.3
194,195 - -0.5
194,195 - +1.2
194,260 + +0.2
194,261 - +0.5
194,376 + -0.3
194,394 + +0.1
194,394 + +0.6
194,395 - +0.1
194,395 - +0.5
194,420 + -0.2
194,705 + -1.1
194,705 + +0.3
194,705 + +0.3
194,705 + +0.3
194,705 + +1.0
194,706 - -1.5
194,706 - -0.1
194,737 + -0.1
194,738 - -0.8
194,738 - +0.8
194,891 + +0.3
194,943 + GFF3992 0.14 -0.3
194,943 + GFF3992 0.14 -0.7
194,943 + GFF3992 0.14 -0.0
195,013 + GFF3992 0.26 -0.7
195,151 - GFF3992 0.51 +0.2
195,312 + GFF3992 0.79 -0.5
195,312 + GFF3992 0.79 +0.2
195,312 + GFF3992 0.79 -0.5
195,313 - GFF3992 0.79 -1.2
195,313 - GFF3992 0.79 +0.4
195,313 - GFF3992 0.79 +0.2
195,313 - GFF3992 0.79 +0.2
195,321 + GFF3992 0.81 -0.9
195,321 + GFF3992 0.81 +0.8
195,321 + GFF3992 0.81 -0.4
195,321 + GFF3992 0.81 -0.9
195,321 + GFF3992 0.81 -0.4
195,321 + GFF3992 0.81 -1.0
195,321 + GFF3992 0.81 +0.5
195,321 + GFF3992 0.81 +0.8
195,322 - GFF3992 0.81 -0.0
195,322 - GFF3992 0.81 -0.1
195,322 - GFF3992 0.81 -0.3
195,322 - GFF3992 0.81 -0.5
195,322 - GFF3992 0.81 -0.4
195,427 - -0.4
195,427 - -0.7
195,463 + +0.2
195,463 + -0.1
195,464 - -1.3
195,464 - -0.8
195,662 - GFF3993 0.80 +0.1
195,676 + GFF3993 0.88 +0.3
195,676 + GFF3993 0.88 -0.5
195,676 + GFF3993 0.88 +0.6
195,676 + GFF3993 0.88 +0.8
195,677 - GFF3993 0.89 +0.1
195,677 - GFF3993 0.89 +0.1
195,677 - GFF3993 0.89 +0.1
195,677 - GFF3993 0.89 -0.0
195,677 - GFF3993 0.89 -0.5
195,706 + +0.5

Or see this region's nucleotide sequence