Strain Fitness in Variovorax sp. SCN45 around GFF3971

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
173,082	+		GFF3970	0.29	-0.6
173,206	-		GFF3970	0.38	+0.5
173,547	+		GFF3970	0.64	-0.5
173,547	+		GFF3970	0.64	-0.4
173,548	-		GFF3970	0.64	-1.9
173,548	-		GFF3970	0.64	-0.1
173,784	+		GFF3970	0.82	+0.3
173,784	+		GFF3970	0.82	-0.4
173,784	+		GFF3970	0.82	+0.8
173,784	+		GFF3970	0.82	+0.6
173,785	-		GFF3970	0.82	+0.0
174,387	-		GFF3971	0.76	+0.1
174,700	+		GFF3972	0.11	-0.5
175,025	-		GFF3972	0.31	+2.1
175,075	+		GFF3972	0.34	+0.3
175,076	-		GFF3972	0.34	+0.2