Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3931 and GFF3932 are separated by 1 nucleotides GFF3932 and GFF3933 are separated by 142 nucleotides GFF3933 and GFF3934 are separated by 37 nucleotides GFF3934 and GFF3935 overlap by 4 nucleotides
GFF3931 - Protein sirB1, at 135,911 to 136,762
GFF3931
GFF3932 - Acetyltransferase, GNAT family, at 136,764 to 137,192
GFF3932
GFF3933 - PhnB protein, at 137,335 to 137,766
GFF3933
GFF3934 - PhnB protein, at 137,804 to 138,229
GFF3934
GFF3935 - RNA polymerase ECF-type sigma factor, at 138,226 to 139,518
GFF3935
Position (kb) 137
138 Strain fitness (log2 ratio) -2
-1
0
1 at 136.418 kb on + strand, within GFF3931 at 136.418 kb on + strand, within GFF3931 at 136.418 kb on + strand, within GFF3931 at 136.418 kb on + strand, within GFF3931 at 136.419 kb on - strand, within GFF3931 at 136.419 kb on - strand, within GFF3931 at 136.419 kb on - strand, within GFF3931 at 136.469 kb on + strand, within GFF3931 at 136.469 kb on + strand, within GFF3931 at 136.469 kb on + strand, within GFF3931 at 136.470 kb on - strand, within GFF3931 at 136.470 kb on - strand, within GFF3931 at 136.470 kb on - strand, within GFF3931 at 136.470 kb on - strand, within GFF3931 at 136.523 kb on - strand, within GFF3931 at 136.682 kb on + strand at 136.682 kb on + strand at 136.682 kb on + strand at 136.683 kb on - strand at 136.683 kb on - strand at 136.683 kb on - strand at 136.683 kb on - strand at 136.929 kb on + strand, within GFF3932 at 136.929 kb on + strand, within GFF3932 at 136.929 kb on + strand, within GFF3932 at 136.929 kb on + strand, within GFF3932 at 136.930 kb on - strand, within GFF3932 at 136.930 kb on - strand, within GFF3932 at 136.930 kb on - strand, within GFF3932 at 136.960 kb on - strand, within GFF3932 at 136.960 kb on - strand, within GFF3932 at 136.960 kb on - strand, within GFF3932 at 136.974 kb on + strand, within GFF3932 at 136.975 kb on - strand, within GFF3932 at 136.975 kb on - strand, within GFF3932 at 137.073 kb on + strand, within GFF3932 at 137.073 kb on + strand, within GFF3932 at 137.074 kb on - strand, within GFF3932 at 137.074 kb on - strand, within GFF3932 at 137.181 kb on + strand at 137.181 kb on + strand at 137.182 kb on - strand at 137.224 kb on + strand at 137.837 kb on + strand at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934 at 137.901 kb on - strand, within GFF3934
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 136,418 + GFF3931 0.60 -2.1 136,418 + GFF3931 0.60 +0.6 136,418 + GFF3931 0.60 -0.5 136,418 + GFF3931 0.60 -0.9 136,419 - GFF3931 0.60 -0.1 136,419 - GFF3931 0.60 +0.5 136,419 - GFF3931 0.60 -0.5 136,469 + GFF3931 0.65 +1.2 136,469 + GFF3931 0.65 +0.1 136,469 + GFF3931 0.65 +0.7 136,470 - GFF3931 0.66 -0.8 136,470 - GFF3931 0.66 -0.6 136,470 - GFF3931 0.66 +0.5 136,470 - GFF3931 0.66 -1.3 136,523 - GFF3931 0.72 -0.2 136,682 + +0.9 136,682 + +0.1 136,682 + +0.1 136,683 - +0.2 136,683 - -0.2 136,683 - -0.1 136,683 - +0.0 136,929 + GFF3932 0.38 +0.0 136,929 + GFF3932 0.38 +1.5 136,929 + GFF3932 0.38 -0.5 136,929 + GFF3932 0.38 -0.6 136,930 - GFF3932 0.39 -0.0 136,930 - GFF3932 0.39 +1.3 136,930 - GFF3932 0.39 +0.7 136,960 - GFF3932 0.46 -0.6 136,960 - GFF3932 0.46 -1.0 136,960 - GFF3932 0.46 -0.6 136,974 + GFF3932 0.49 +0.2 136,975 - GFF3932 0.49 +0.9 136,975 - GFF3932 0.49 -0.9 137,073 + GFF3932 0.72 +0.3 137,073 + GFF3932 0.72 +0.0 137,074 - GFF3932 0.72 -0.1 137,074 - GFF3932 0.72 -1.0 137,181 + +1.2 137,181 + -0.5 137,182 - +0.1 137,224 + +0.3 137,837 + -1.5 137,901 - GFF3934 0.23 -1.0 137,901 - GFF3934 0.23 +0.1 137,901 - GFF3934 0.23 +0.2 137,901 - GFF3934 0.23 -2.5 137,901 - GFF3934 0.23 -0.3 137,901 - GFF3934 0.23 -1.8
Or see this region's nucleotide sequence