Strain Fitness in Variovorax sp. SCN45 around GFF3930

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3927 and GFF3928 are separated by 161 nucleotidesGFF3928 and GFF3929 are separated by 96 nucleotidesGFF3929 and GFF3930 are separated by 15 nucleotidesGFF3930 and GFF3931 are separated by 77 nucleotidesGFF3931 and GFF3932 are separated by 1 nucleotides GFF3927 - N-acetylornithine aminotransferase (EC 2.6.1.11), at 131,959 to 133,167 GFF3927 GFF3928 - Histone acetyltransferase HPA2 and related acetyltransferases, at 133,329 to 133,739 GFF3928 GFF3929 - SSU ribosomal protein S20p, at 133,836 to 134,150 GFF3929 GFF3930 - Peptidoglycan lipid II flippase MurJ, at 134,166 to 135,833 GFF3930 GFF3931 - Protein sirB1, at 135,911 to 136,762 GFF3931 GFF3932 - Acetyltransferase, GNAT family, at 136,764 to 137,192 GFF3932 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1at 133.183 kb on - strandat 133.183 kb on - strandat 133.198 kb on + strandat 133.199 kb on - strandat 133.199 kb on - strandat 133.199 kb on - strandat 133.199 kb on - strandat 133.238 kb on - strandat 133.279 kb on + strandat 133.280 kb on - strandat 133.467 kb on + strand, within GFF3928at 133.468 kb on - strand, within GFF3928at 133.468 kb on - strand, within GFF3928at 133.468 kb on - strand, within GFF3928at 133.477 kb on - strand, within GFF3928at 133.477 kb on - strand, within GFF3928at 133.477 kb on - strand, within GFF3928at 133.764 kb on + strandat 134.200 kb on + strandat 134.201 kb on - strandat 134.201 kb on - strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.267 kb on - strandat 134.267 kb on - strandat 134.267 kb on - strandat 134.267 kb on - strandat 135.900 kb on + strandat 135.900 kb on + strandat 135.900 kb on + strandat 135.901 kb on - strandat 135.901 kb on - strandat 135.912 kb on - strandat 135.935 kb on - strandat 135.935 kb on - strandat 135.947 kb on + strandat 135.947 kb on + strandat 135.948 kb on - strandat 135.948 kb on - strandat 136.022 kb on + strand, within GFF3931at 136.022 kb on + strand, within GFF3931at 136.022 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.203 kb on - strand, within GFF3931at 136.203 kb on - strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.419 kb on - strand, within GFF3931at 136.419 kb on - strand, within GFF3931at 136.419 kb on - strand, within GFF3931at 136.469 kb on + strand, within GFF3931at 136.469 kb on + strand, within GFF3931at 136.469 kb on + strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.523 kb on - strand, within GFF3931at 136.682 kb on + strandat 136.682 kb on + strandat 136.682 kb on + strandat 136.683 kb on - strandat 136.683 kb on - strandat 136.683 kb on - strandat 136.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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133,183 - -0.8
133,183 - +0.4
133,198 + -0.8
133,199 - -0.1
133,199 - -0.2
133,199 - -0.1
133,199 - -0.3
133,238 - -0.6
133,279 + -0.8
133,280 - -0.2
133,467 + GFF3928 0.34 -0.0
133,468 - GFF3928 0.34 -2.2
133,468 - GFF3928 0.34 -0.8
133,468 - GFF3928 0.34 -0.8
133,477 - GFF3928 0.36 -0.5
133,477 - GFF3928 0.36 +0.1
133,477 - GFF3928 0.36 -1.5
133,764 + +0.6
134,200 + -0.8
134,201 - +0.3
134,201 - -0.5
134,266 + -0.9
134,266 + -1.3
134,266 + -1.3
134,266 + -1.1
134,267 - -0.1
134,267 - +0.5
134,267 - +0.0
134,267 - -1.5
135,900 + -0.7
135,900 + +0.5
135,900 + -0.1
135,901 - -1.0
135,901 - -1.8
135,912 - +0.3
135,935 - +0.2
135,935 - -0.3
135,947 + -0.5
135,947 + -0.2
135,948 - -0.0
135,948 - -1.3
136,022 + GFF3931 0.13 -0.6
136,022 + GFF3931 0.13 -0.6
136,022 + GFF3931 0.13 -0.0
136,181 + GFF3931 0.32 -0.2
136,181 + GFF3931 0.32 -0.0
136,181 + GFF3931 0.32 -0.0
136,181 + GFF3931 0.32 -0.0
136,181 + GFF3931 0.32 +1.1
136,181 + GFF3931 0.32 -0.1
136,181 + GFF3931 0.32 -0.6
136,182 - GFF3931 0.32 +0.5
136,182 - GFF3931 0.32 +1.3
136,182 - GFF3931 0.32 +0.2
136,182 - GFF3931 0.32 -0.4
136,182 - GFF3931 0.32 +1.5
136,182 - GFF3931 0.32 +1.0
136,182 - GFF3931 0.32 -0.7
136,184 + GFF3931 0.32 -0.3
136,184 + GFF3931 0.32 +0.2
136,184 + GFF3931 0.32 +0.6
136,184 + GFF3931 0.32 +0.8
136,184 + GFF3931 0.32 -0.5
136,184 + GFF3931 0.32 +0.1
136,184 + GFF3931 0.32 -0.1
136,184 + GFF3931 0.32 -0.5
136,184 + GFF3931 0.32 +1.5
136,184 + GFF3931 0.32 +0.0
136,184 + GFF3931 0.32 -0.0
136,184 + GFF3931 0.32 -0.9
136,184 + GFF3931 0.32 -0.0
136,185 - GFF3931 0.32 -0.5
136,185 - GFF3931 0.32 -0.6
136,185 - GFF3931 0.32 +0.9
136,185 - GFF3931 0.32 -0.3
136,185 - GFF3931 0.32 -0.9
136,185 - GFF3931 0.32 +0.5
136,185 - GFF3931 0.32 -0.1
136,185 - GFF3931 0.32 +1.5
136,185 - GFF3931 0.32 +0.3
136,185 - GFF3931 0.32 -0.0
136,185 - GFF3931 0.32 +1.3
136,185 - GFF3931 0.32 +1.5
136,185 - GFF3931 0.32 -0.8
136,185 - GFF3931 0.32 -0.3
136,185 - GFF3931 0.32 -0.7
136,185 - GFF3931 0.32 +1.1
136,185 - GFF3931 0.32 -0.3
136,202 + GFF3931 0.34 -0.5
136,202 + GFF3931 0.34 +0.0
136,202 + GFF3931 0.34 +0.5
136,202 + GFF3931 0.34 -0.7
136,202 + GFF3931 0.34 -0.3
136,203 - GFF3931 0.34 -0.9
136,203 - GFF3931 0.34 -0.1
136,418 + GFF3931 0.60 -2.1
136,418 + GFF3931 0.60 +0.6
136,418 + GFF3931 0.60 -0.5
136,418 + GFF3931 0.60 -0.9
136,419 - GFF3931 0.60 -0.1
136,419 - GFF3931 0.60 +0.5
136,419 - GFF3931 0.60 -0.5
136,469 + GFF3931 0.65 +1.2
136,469 + GFF3931 0.65 +0.1
136,469 + GFF3931 0.65 +0.7
136,470 - GFF3931 0.66 -0.8
136,470 - GFF3931 0.66 -0.6
136,470 - GFF3931 0.66 +0.5
136,470 - GFF3931 0.66 -1.3
136,523 - GFF3931 0.72 -0.2
136,682 + +0.9
136,682 + +0.1
136,682 + +0.1
136,683 - +0.2
136,683 - -0.2
136,683 - -0.1
136,683 - +0.0

Or see this region's nucleotide sequence