Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3854 and GFF3855 are separated by 146 nucleotides GFF3855 and GFF3856 are separated by 61 nucleotides GFF3856 and GFF3857 overlap by 1 nucleotides
GFF3854 - FIG01269488: protein, clustered with ribosomal protein L32p, at 53,699 to 54,268
GFF3854
GFF3855 - LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-independent, at 54,415 to 54,597
GFF3855
GFF3856 - Phosphate:acyl-ACP acyltransferase PlsX (EC 2.3.1.n2), at 54,659 to 55,756
GFF3856
GFF3857 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 55,756 to 56,736
GFF3857
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.686 kb on + strand at 53.686 kb on + strand at 53.686 kb on + strand at 53.789 kb on + strand, within GFF3854 at 53.789 kb on + strand, within GFF3854 at 53.789 kb on + strand, within GFF3854 at 53.789 kb on + strand, within GFF3854 at 53.790 kb on - strand, within GFF3854 at 54.266 kb on + strand at 54.266 kb on + strand at 54.267 kb on - strand at 54.289 kb on + strand at 54.289 kb on + strand at 54.290 kb on - strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.627 kb on + strand at 54.628 kb on - strand at 54.628 kb on - strand at 54.628 kb on - strand at 54.628 kb on - strand at 54.628 kb on - strand at 55.768 kb on + strand at 55.768 kb on + strand at 55.779 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.795 kb on + strand at 55.946 kb on - strand, within GFF3857 at 56.128 kb on + strand, within GFF3857 at 56.128 kb on + strand, within GFF3857 at 56.723 kb on + strand at 56.724 kb on - strand at 56.734 kb on + strand at 56.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 53,686 + -0.4 53,686 + +0.2 53,686 + +0.5 53,789 + GFF3854 0.16 -1.5 53,789 + GFF3854 0.16 +1.5 53,789 + GFF3854 0.16 -0.8 53,789 + GFF3854 0.16 -1.3 53,790 - GFF3854 0.16 -2.6 54,266 + -0.2 54,266 + +1.1 54,267 - -0.5 54,289 + -1.0 54,289 + +1.8 54,290 - +0.5 54,627 + +0.6 54,627 + -0.1 54,627 + -0.7 54,627 + -0.3 54,627 + -0.7 54,627 + +0.6 54,627 + -0.3 54,627 + -0.2 54,628 - -0.9 54,628 - +0.4 54,628 - -0.5 54,628 - +1.4 54,628 - -0.6 55,768 + +0.7 55,768 + +0.1 55,779 + +1.2 55,795 + -0.8 55,795 + +0.5 55,795 + +0.4 55,795 + -0.2 55,795 + +0.2 55,795 + -0.7 55,795 + +0.4 55,795 + +1.0 55,795 + +0.4 55,795 + -1.8 55,795 + +0.0 55,795 + +0.9 55,795 + -0.2 55,795 + -1.8 55,946 - GFF3857 0.19 +1.1 56,128 + GFF3857 0.38 +1.0 56,128 + GFF3857 0.38 -1.0 56,723 + +0.1 56,724 - +0.4 56,734 + -0.5 56,734 + -0.5
Or see this region's nucleotide sequence