Strain Fitness in Variovorax sp. SCN45 around GFF385

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF383 and GFF384 are separated by 14 nucleotidesGFF384 and GFF385 are separated by 0 nucleotidesGFF385 and GFF386 are separated by 38 nucleotides GFF383 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191), at 414,262 to 415,239 GFF383 GFF384 - Periplasmic chaperone of outer membrane proteins Skp @ Outer membrane protein H precursor, at 415,254 to 415,805 GFF384 GFF385 - Outer membrane protein assembly factor YaeT, at 415,806 to 418,241 GFF385 GFF386 - Membrane-associated zinc metalloprotease, at 418,280 to 419,650 GFF386 Position (kb) 415 416 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.282 kb on - strandat 418.413 kb on + strandat 418.413 kb on + strandat 418.413 kb on + strandat 418.413 kb on + strandat 418.413 kb on + strandat 418.413 kb on + strandat 418.413 kb on + strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.414 kb on - strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.416 kb on + strandat 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.417 kb on - strand, within GFF386at 418.503 kb on + strand, within GFF386at 418.503 kb on + strand, within GFF386at 418.503 kb on + strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.504 kb on - strand, within GFF386at 418.539 kb on + strand, within GFF386at 418.539 kb on + strand, within GFF386at 418.540 kb on - strand, within GFF386at 418.540 kb on - strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.713 kb on + strand, within GFF386at 418.714 kb on - strand, within GFF386at 418.714 kb on - strand, within GFF386at 418.714 kb on - strand, within GFF386at 418.714 kb on - strand, within GFF386at 418.714 kb on - strand, within GFF386at 418.714 kb on - strand, within GFF386at 418.754 kb on + strand, within GFF386at 418.754 kb on + strand, within GFF386at 418.754 kb on + strand, within GFF386at 418.755 kb on - strand, within GFF386at 418.850 kb on + strand, within GFF386at 418.850 kb on + strand, within GFF386at 418.850 kb on + strand, within GFF386at 418.850 kb on + strand, within GFF386at 418.850 kb on + strand, within GFF386at 418.850 kb on + strand, within GFF386at 418.851 kb on - strand, within GFF386at 418.851 kb on - strand, within GFF386at 418.851 kb on - strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.199 kb on + strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386at 419.200 kb on - strand, within GFF386

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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418,282 - -1.0
418,413 + +0.0
418,413 + -0.4
418,413 + -0.6
418,413 + -0.8
418,413 + -0.2
418,413 + -0.3
418,413 + +0.4
418,414 - +0.2
418,414 - +0.2
418,414 - +0.0
418,414 - -0.6
418,414 - -0.4
418,414 - +0.5
418,414 - -0.8
418,414 - -0.4
418,414 - -2.0
418,414 - +0.4
418,414 - -0.7
418,414 - +0.6
418,414 - -1.3
418,416 + -1.3
418,416 + +0.8
418,416 + -0.5
418,416 + -1.4
418,416 + -0.7
418,416 + +0.1
418,416 + +0.3
418,416 + -1.1
418,416 + -0.1
418,416 + +1.0
418,416 + -0.5
418,416 + +0.5
418,416 + -0.3
418,417 - GFF386 0.10 -0.9
418,417 - GFF386 0.10 +0.1
418,417 - GFF386 0.10 -0.2
418,417 - GFF386 0.10 +0.0
418,417 - GFF386 0.10 +0.4
418,417 - GFF386 0.10 -0.4
418,417 - GFF386 0.10 -0.1
418,417 - GFF386 0.10 +1.0
418,417 - GFF386 0.10 -0.3
418,417 - GFF386 0.10 +0.0
418,417 - GFF386 0.10 -0.1
418,417 - GFF386 0.10 -1.1
418,417 - GFF386 0.10 +0.8
418,417 - GFF386 0.10 +0.5
418,417 - GFF386 0.10 +0.3
418,417 - GFF386 0.10 -0.6
418,417 - GFF386 0.10 -0.3
418,417 - GFF386 0.10 +0.4
418,417 - GFF386 0.10 -2.4
418,503 + GFF386 0.16 +0.3
418,503 + GFF386 0.16 -0.2
418,503 + GFF386 0.16 -0.4
418,504 - GFF386 0.16 +0.1
418,504 - GFF386 0.16 -0.9
418,504 - GFF386 0.16 -0.1
418,504 - GFF386 0.16 +0.4
418,504 - GFF386 0.16 +0.3
418,504 - GFF386 0.16 -0.7
418,504 - GFF386 0.16 -0.1
418,504 - GFF386 0.16 +0.2
418,504 - GFF386 0.16 -0.4
418,504 - GFF386 0.16 +0.5
418,504 - GFF386 0.16 +0.0
418,504 - GFF386 0.16 +0.4
418,504 - GFF386 0.16 -0.9
418,504 - GFF386 0.16 -0.2
418,539 + GFF386 0.19 +0.4
418,539 + GFF386 0.19 -0.7
418,540 - GFF386 0.19 -0.5
418,540 - GFF386 0.19 -0.4
418,713 + GFF386 0.32 -0.4
418,713 + GFF386 0.32 -0.3
418,713 + GFF386 0.32 +0.2
418,713 + GFF386 0.32 -0.3
418,713 + GFF386 0.32 +0.3
418,713 + GFF386 0.32 -1.1
418,713 + GFF386 0.32 -1.0
418,713 + GFF386 0.32 +0.3
418,713 + GFF386 0.32 -0.2
418,713 + GFF386 0.32 -1.4
418,713 + GFF386 0.32 -0.9
418,713 + GFF386 0.32 -0.4
418,713 + GFF386 0.32 -0.5
418,713 + GFF386 0.32 +0.4
418,714 - GFF386 0.32 -0.2
418,714 - GFF386 0.32 -2.4
418,714 - GFF386 0.32 -0.0
418,714 - GFF386 0.32 -1.4
418,714 - GFF386 0.32 -0.5
418,714 - GFF386 0.32 +0.3
418,754 + GFF386 0.35 +0.4
418,754 + GFF386 0.35 -0.3
418,754 + GFF386 0.35 +0.0
418,755 - GFF386 0.35 +0.8
418,850 + GFF386 0.42 -0.1
418,850 + GFF386 0.42 -0.4
418,850 + GFF386 0.42 -0.6
418,850 + GFF386 0.42 +1.2
418,850 + GFF386 0.42 +0.6
418,850 + GFF386 0.42 -0.5
418,851 - GFF386 0.42 -1.2
418,851 - GFF386 0.42 -0.4
418,851 - GFF386 0.42 -0.5
419,199 + GFF386 0.67 -1.4
419,199 + GFF386 0.67 -0.7
419,199 + GFF386 0.67 -0.3
419,199 + GFF386 0.67 -0.4
419,199 + GFF386 0.67 -0.1
419,199 + GFF386 0.67 -0.5
419,199 + GFF386 0.67 -0.4
419,199 + GFF386 0.67 +2.8
419,199 + GFF386 0.67 -0.3
419,199 + GFF386 0.67 -1.2
419,199 + GFF386 0.67 +1.6
419,199 + GFF386 0.67 +0.3
419,199 + GFF386 0.67 -0.8
419,199 + GFF386 0.67 -0.6
419,199 + GFF386 0.67 +0.3
419,199 + GFF386 0.67 -0.7
419,199 + GFF386 0.67 -1.0
419,199 + GFF386 0.67 -0.1
419,200 - GFF386 0.67 +0.9
419,200 - GFF386 0.67 +1.2
419,200 - GFF386 0.67 +0.4
419,200 - GFF386 0.67 -1.2
419,200 - GFF386 0.67 -0.7
419,200 - GFF386 0.67 +0.5
419,200 - GFF386 0.67 -0.1
419,200 - GFF386 0.67 -0.6
419,200 - GFF386 0.67 -0.4
419,200 - GFF386 0.67 +1.3
419,200 - GFF386 0.67 -0.4
419,200 - GFF386 0.67 -0.8
419,200 - GFF386 0.67 -1.0
419,200 - GFF386 0.67 -0.7

Or see this region's nucleotide sequence