Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3836 and GFF3837 overlap by 4 nucleotides GFF3837 and GFF3838 are separated by 166 nucleotides
GFF3836 - Cyclic beta-1,2-glucan synthase (EC 2.4.1.-), at 26,019 to 34,184
GFF3836
GFF3837 - no description, at 34,181 to 34,399
GFF3837
GFF3838 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 34,566 to 37,409
GFF3838
Position (kb) 34
35 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 33.244 kb on - strand, within GFF3836 at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.454 kb on + strand at 33.455 kb on - strand at 33.455 kb on - strand at 33.455 kb on - strand at 33.455 kb on - strand at 33.490 kb on + strand at 33.491 kb on - strand at 33.612 kb on + strand at 33.612 kb on + strand at 33.613 kb on - strand at 33.676 kb on + strand at 33.736 kb on + strand at 33.736 kb on + strand at 33.736 kb on + strand at 33.737 kb on + strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.754 kb on + strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.809 kb on - strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.901 kb on + strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.932 kb on - strand at 34.378 kb on + strand at 34.416 kb on + strand at 34.476 kb on + strand at 34.477 kb on - strand at 34.477 kb on - strand at 34.486 kb on + strand at 34.487 kb on - strand at 34.515 kb on + strand at 34.516 kb on - strand at 34.516 kb on - strand at 34.516 kb on - strand at 34.699 kb on + strand at 34.699 kb on + strand at 34.699 kb on + strand at 34.700 kb on - strand at 34.700 kb on - strand at 34.862 kb on - strand, within GFF3838 at 34.904 kb on - strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 35.188 kb on + strand, within GFF3838 at 35.188 kb on + strand, within GFF3838 at 35.189 kb on - strand, within GFF3838 at 35.251 kb on - strand, within GFF3838 at 35.371 kb on + strand, within GFF3838 at 35.371 kb on + strand, within GFF3838
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 33,244 - GFF3836 0.88 +3.1 33,454 + +1.5 33,454 + +1.0 33,454 + -0.6 33,454 + -0.7 33,454 + +0.5 33,454 + +0.8 33,454 + -2.5 33,455 - -0.4 33,455 - -0.2 33,455 - -0.2 33,455 - -0.2 33,490 + -0.5 33,491 - +0.1 33,612 + -0.9 33,612 + -1.0 33,613 - -0.9 33,676 + +0.7 33,736 + -0.2 33,736 + +0.1 33,736 + -0.2 33,737 + -0.8 33,737 - -0.4 33,737 - -0.1 33,737 - -0.6 33,737 - +0.0 33,754 + -0.2 33,755 - -0.3 33,755 - -0.0 33,755 - +0.2 33,755 - -0.3 33,809 - -0.3 33,811 + -0.3 33,811 + -0.6 33,811 + +0.1 33,811 + -0.0 33,811 + -0.3 33,812 - -0.5 33,812 - +0.4 33,812 - +0.1 33,812 - -1.0 33,901 + -0.8 33,902 - +0.4 33,902 - +0.4 33,902 - -0.4 33,902 - -0.8 33,902 - +0.2 33,932 - +0.3 34,378 + -0.5 34,416 + +0.2 34,476 + -1.2 34,477 - +1.5 34,477 - -1.0 34,486 + +0.0 34,487 - -0.6 34,515 + -0.0 34,516 - -1.0 34,516 - -0.5 34,516 - -1.2 34,699 + -2.5 34,699 + +1.5 34,699 + -2.3 34,700 - -1.3 34,700 - -3.3 34,862 - GFF3838 0.10 -0.8 34,904 - GFF3838 0.12 -2.3 34,945 + GFF3838 0.13 -1.6 34,945 + GFF3838 0.13 -3.1 34,945 + GFF3838 0.13 -1.0 34,945 + GFF3838 0.13 -2.2 34,946 - GFF3838 0.13 -0.8 34,946 - GFF3838 0.13 -2.6 34,946 - GFF3838 0.13 -3.0 35,188 + GFF3838 0.22 -4.1 35,188 + GFF3838 0.22 -4.9 35,189 - GFF3838 0.22 -0.8 35,251 - GFF3838 0.24 -0.8 35,371 + GFF3838 0.28 -3.1 35,371 + GFF3838 0.28 -1.5
Or see this region's nucleotide sequence