Strain Fitness in Variovorax sp. SCN45 around GFF3832

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3830 and GFF3831 are separated by 8 nucleotidesGFF3831 and GFF3832 are separated by 48 nucleotidesGFF3832 and GFF3833 are separated by 16 nucleotides GFF3830 - Uncharacterized MFS-type transporter, at 20,808 to 22,064 GFF3830 GFF3831 - Acetyltransferase, GNAT family, at 22,073 to 22,597 GFF3831 GFF3832 - Transcriptional regulator KPN_02830, LysR family, at 22,646 to 23,569 GFF3832 GFF3833 - FIG01056426: hypothetical protein, at 23,586 to 24,842 GFF3833 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1 2at 21.713 kb on - strand, within GFF3830at 21.745 kb on + strand, within GFF3830at 21.745 kb on + strand, within GFF3830at 21.746 kb on - strand, within GFF3830at 21.890 kb on - strand, within GFF3830at 21.912 kb on + strand, within GFF3830at 22.311 kb on + strand, within GFF3831at 22.311 kb on + strand, within GFF3831at 22.312 kb on - strand, within GFF3831at 22.312 kb on - strand, within GFF3831at 22.312 kb on - strand, within GFF3831at 22.312 kb on - strand, within GFF3831at 22.312 kb on - strand, within GFF3831at 22.356 kb on + strand, within GFF3831at 22.357 kb on - strand, within GFF3831at 22.368 kb on + strand, within GFF3831at 22.368 kb on + strand, within GFF3831at 22.369 kb on - strand, within GFF3831at 22.369 kb on - strand, within GFF3831at 22.374 kb on + strand, within GFF3831at 22.410 kb on + strand, within GFF3831at 22.411 kb on - strand, within GFF3831at 22.411 kb on - strand, within GFF3831at 22.506 kb on + strand, within GFF3831at 22.506 kb on + strand, within GFF3831at 22.506 kb on + strand, within GFF3831at 22.506 kb on + strand, within GFF3831at 22.506 kb on + strand, within GFF3831at 22.506 kb on + strand, within GFF3831at 22.507 kb on - strand, within GFF3831at 22.515 kb on + strand, within GFF3831at 22.515 kb on + strand, within GFF3831at 22.515 kb on + strand, within GFF3831at 22.515 kb on + strand, within GFF3831at 22.515 kb on + strand, within GFF3831at 22.515 kb on + strand, within GFF3831at 22.516 kb on - strand, within GFF3831at 22.516 kb on - strand, within GFF3831at 22.516 kb on - strand, within GFF3831at 22.516 kb on - strand, within GFF3831at 24.019 kb on + strand, within GFF3833at 24.020 kb on - strand, within GFF3833at 24.020 kb on - strand, within GFF3833at 24.020 kb on - strand, within GFF3833at 24.020 kb on - strand, within GFF3833at 24.088 kb on + strand, within GFF3833at 24.089 kb on - strand, within GFF3833at 24.089 kb on - strand, within GFF3833at 24.089 kb on - strand, within GFF3833at 24.089 kb on - strand, within GFF3833at 24.094 kb on + strand, within GFF3833at 24.094 kb on + strand, within GFF3833at 24.094 kb on + strand, within GFF3833at 24.094 kb on + strand, within GFF3833at 24.095 kb on - strand, within GFF3833at 24.095 kb on - strand, within GFF3833at 24.095 kb on - strand, within GFF3833at 24.095 kb on - strand, within GFF3833at 24.095 kb on - strand, within GFF3833at 24.095 kb on - strand, within GFF3833at 24.358 kb on + strand, within GFF3833at 24.359 kb on - strand, within GFF3833at 24.359 kb on - strand, within GFF3833

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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21,713 - GFF3830 0.72 -0.5
21,745 + GFF3830 0.75 +0.9
21,745 + GFF3830 0.75 +0.6
21,746 - GFF3830 0.75 +1.9
21,890 - GFF3830 0.86 -0.3
21,912 + GFF3830 0.88 -0.0
22,311 + GFF3831 0.45 +0.5
22,311 + GFF3831 0.45 -1.1
22,312 - GFF3831 0.46 +0.5
22,312 - GFF3831 0.46 -0.6
22,312 - GFF3831 0.46 +1.1
22,312 - GFF3831 0.46 +0.3
22,312 - GFF3831 0.46 +0.5
22,356 + GFF3831 0.54 -0.5
22,357 - GFF3831 0.54 -0.1
22,368 + GFF3831 0.56 -0.5
22,368 + GFF3831 0.56 +1.1
22,369 - GFF3831 0.56 -0.5
22,369 - GFF3831 0.56 -1.0
22,374 + GFF3831 0.57 -0.3
22,410 + GFF3831 0.64 +2.5
22,411 - GFF3831 0.64 +0.5
22,411 - GFF3831 0.64 -0.4
22,506 + GFF3831 0.82 -0.2
22,506 + GFF3831 0.82 -0.0
22,506 + GFF3831 0.82 +0.3
22,506 + GFF3831 0.82 -1.0
22,506 + GFF3831 0.82 +0.3
22,506 + GFF3831 0.82 +1.3
22,507 - GFF3831 0.83 -1.0
22,515 + GFF3831 0.84 +1.3
22,515 + GFF3831 0.84 -0.8
22,515 + GFF3831 0.84 -1.0
22,515 + GFF3831 0.84 -0.8
22,515 + GFF3831 0.84 +0.9
22,515 + GFF3831 0.84 +0.1
22,516 - GFF3831 0.84 -0.3
22,516 - GFF3831 0.84 +0.2
22,516 - GFF3831 0.84 -0.1
22,516 - GFF3831 0.84 +0.5
24,019 + GFF3833 0.34 -0.1
24,020 - GFF3833 0.35 -0.7
24,020 - GFF3833 0.35 -0.4
24,020 - GFF3833 0.35 -1.2
24,020 - GFF3833 0.35 -1.4
24,088 + GFF3833 0.40 +2.3
24,089 - GFF3833 0.40 -0.6
24,089 - GFF3833 0.40 +0.5
24,089 - GFF3833 0.40 +0.7
24,089 - GFF3833 0.40 -0.4
24,094 + GFF3833 0.40 -0.1
24,094 + GFF3833 0.40 +0.3
24,094 + GFF3833 0.40 +0.5
24,094 + GFF3833 0.40 -0.5
24,095 - GFF3833 0.40 +0.5
24,095 - GFF3833 0.40 +0.4
24,095 - GFF3833 0.40 -0.2
24,095 - GFF3833 0.40 -0.2
24,095 - GFF3833 0.40 +0.3
24,095 - GFF3833 0.40 +2.1
24,358 + GFF3833 0.61 +0.2
24,359 - GFF3833 0.61 -0.6
24,359 - GFF3833 0.61 -0.0

Or see this region's nucleotide sequence