Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3795 and GFF3796 are separated by 71 nucleotides GFF3796 and GFF3797 are separated by 24 nucleotides GFF3797 and GFF3798 are separated by 69 nucleotides GFF3798 and GFF3799 are separated by 82 nucleotides
GFF3795 - Flagellar hook-length control protein FliK, at 291,968 to 296,440
GFF3795
GFF3796 - putative lipoprotein, at 296,512 to 297,387
GFF3796
GFF3797 - Ammonia monooxygenase, at 297,412 to 298,515
GFF3797
GFF3798 - FIG00932573: hypothetical protein, at 298,585 to 298,896
GFF3798
GFF3799 - Putative PROLIN-rich signal peptide protein, at 298,979 to 300,211
GFF3799
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 296.513 kb on + strand at 296.555 kb on + strand at 296.555 kb on + strand at 296.555 kb on + strand at 296.556 kb on - strand at 296.598 kb on - strand at 296.873 kb on + strand, within GFF3796 at 296.873 kb on + strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.999 kb on + strand, within GFF3796 at 296.999 kb on + strand, within GFF3796 at 296.999 kb on - strand, within GFF3796 at 297.000 kb on - strand, within GFF3796 at 297.000 kb on - strand, within GFF3796 at 297.000 kb on - strand, within GFF3796 at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.396 kb on - strand at 297.396 kb on - strand at 297.396 kb on - strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.664 kb on + strand, within GFF3797 at 297.664 kb on + strand, within GFF3797 at 297.664 kb on + strand, within GFF3797 at 297.664 kb on + strand, within GFF3797 at 297.664 kb on + strand, within GFF3797 at 297.664 kb on + strand, within GFF3797 at 297.664 kb on + strand, within GFF3797 at 297.664 kb on + strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.665 kb on - strand, within GFF3797 at 297.829 kb on + strand, within GFF3797 at 297.830 kb on - strand, within GFF3797 at 297.830 kb on - strand, within GFF3797 at 297.830 kb on - strand, within GFF3797 at 297.986 kb on + strand, within GFF3797 at 297.987 kb on - strand, within GFF3797 at 298.501 kb on + strand at 298.501 kb on + strand at 298.501 kb on + strand at 298.501 kb on + strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.622 kb on + strand, within GFF3798 at 298.622 kb on + strand, within GFF3798 at 298.623 kb on - strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.875 kb on + strand at 298.875 kb on + strand at 298.876 kb on - strand at 298.896 kb on + strand at 298.896 kb on + strand at 298.897 kb on - strand at 298.897 kb on - strand at 298.897 kb on - strand at 298.897 kb on - strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.907 kb on + strand at 298.907 kb on + strand at 298.907 kb on + strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.950 kb on + strand at 298.950 kb on + strand at 298.950 kb on + strand at 298.951 kb on - strand at 298.951 kb on - strand at 298.951 kb on - strand at 298.951 kb on - strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.077 kb on - strand at 299.077 kb on - strand at 299.077 kb on - strand at 299.077 kb on - strand at 299.152 kb on - strand, within GFF3799 at 299.260 kb on - strand, within GFF3799 at 299.291 kb on + strand, within GFF3799 at 299.291 kb on + strand, within GFF3799 at 299.292 kb on - strand, within GFF3799 at 299.424 kb on + strand, within GFF3799 at 299.425 kb on - strand, within GFF3799
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 296,513 + +0.6 296,555 + -0.1 296,555 + +0.1 296,555 + -1.0 296,556 - -0.5 296,598 - -0.1 296,873 + GFF3796 0.41 +0.4 296,873 + GFF3796 0.41 -0.4 296,874 - GFF3796 0.41 +1.1 296,874 - GFF3796 0.41 +0.3 296,874 - GFF3796 0.41 -1.9 296,874 - GFF3796 0.41 +0.8 296,874 - GFF3796 0.41 -0.7 296,999 + GFF3796 0.56 +0.5 296,999 + GFF3796 0.56 +0.5 296,999 - GFF3796 0.56 +0.4 297,000 - GFF3796 0.56 +1.6 297,000 - GFF3796 0.56 -0.4 297,000 - GFF3796 0.56 +0.1 297,395 + -0.7 297,395 + +0.3 297,395 + -2.7 297,395 + -0.3 297,395 + -0.1 297,395 + -0.7 297,395 + +0.1 297,395 + +0.0 297,396 - -0.0 297,396 - +0.0 297,396 - +0.4 297,398 + -0.1 297,398 + -0.1 297,398 + -1.0 297,398 + -0.5 297,398 + -0.4 297,398 + +1.0 297,398 + -0.5 297,398 + -1.2 297,398 + -1.5 297,398 + -0.5 297,398 + +0.9 297,398 + +0.1 297,398 + -0.2 297,398 + +2.4 297,398 + -0.1 297,398 + -0.5 297,398 + -1.0 297,398 + +0.1 297,398 + -1.7 297,398 + +3.2 297,399 - -0.3 297,399 - -0.3 297,399 - +1.8 297,399 - -0.9 297,399 - -0.5 297,399 - -0.1 297,399 - -0.9 297,399 - +0.4 297,399 - +0.2 297,399 - +0.5 297,399 - +0.0 297,399 - -0.3 297,399 - +0.1 297,399 - +0.6 297,399 - +1.2 297,399 - +0.2 297,399 - -1.7 297,664 + GFF3797 0.23 -0.4 297,664 + GFF3797 0.23 -0.3 297,664 + GFF3797 0.23 -0.2 297,664 + GFF3797 0.23 +0.7 297,664 + GFF3797 0.23 +1.8 297,664 + GFF3797 0.23 -0.6 297,664 + GFF3797 0.23 +0.5 297,664 + GFF3797 0.23 +0.5 297,665 - GFF3797 0.23 +0.5 297,665 - GFF3797 0.23 +0.4 297,665 - GFF3797 0.23 +0.0 297,665 - GFF3797 0.23 +1.2 297,665 - GFF3797 0.23 +0.2 297,665 - GFF3797 0.23 -0.7 297,665 - GFF3797 0.23 -0.5 297,665 - GFF3797 0.23 +0.1 297,665 - GFF3797 0.23 +0.2 297,665 - GFF3797 0.23 +0.1 297,829 + GFF3797 0.38 -0.1 297,830 - GFF3797 0.38 +1.3 297,830 - GFF3797 0.38 -0.3 297,830 - GFF3797 0.38 -0.5 297,986 + GFF3797 0.52 -0.2 297,987 - GFF3797 0.52 +0.8 298,501 + +0.3 298,501 + +0.0 298,501 + -0.2 298,501 + -0.1 298,502 - +0.3 298,502 - +0.4 298,502 - +0.3 298,502 - -0.5 298,502 - -0.4 298,502 - -0.4 298,622 + GFF3798 0.12 -0.3 298,622 + GFF3798 0.12 -0.2 298,623 - GFF3798 0.12 +0.1 298,721 + GFF3798 0.44 -2.5 298,721 + GFF3798 0.44 +0.3 298,721 + GFF3798 0.44 +0.4 298,721 + GFF3798 0.44 -0.0 298,721 + GFF3798 0.44 -0.9 298,722 - GFF3798 0.44 -0.5 298,722 - GFF3798 0.44 +0.2 298,722 - GFF3798 0.44 +1.5 298,722 - GFF3798 0.44 -0.3 298,722 - GFF3798 0.44 -0.7 298,722 - GFF3798 0.44 +0.8 298,722 - GFF3798 0.44 +0.3 298,850 + GFF3798 0.85 -2.0 298,850 + GFF3798 0.85 +0.0 298,850 + GFF3798 0.85 -0.3 298,850 + GFF3798 0.85 -1.1 298,850 + GFF3798 0.85 -0.2 298,850 + GFF3798 0.85 -0.0 298,850 + GFF3798 0.85 -0.0 298,850 + GFF3798 0.85 +0.2 298,850 + GFF3798 0.85 -1.0 298,850 + GFF3798 0.85 +0.2 298,850 + GFF3798 0.85 +0.3 298,851 - GFF3798 0.85 -0.7 298,851 - GFF3798 0.85 -1.1 298,851 - GFF3798 0.85 +0.2 298,851 - GFF3798 0.85 -0.1 298,851 - GFF3798 0.85 +0.7 298,851 - GFF3798 0.85 +0.6 298,851 - GFF3798 0.85 +1.0 298,851 - GFF3798 0.85 -1.2 298,851 - GFF3798 0.85 +0.1 298,851 - GFF3798 0.85 +1.8 298,851 - GFF3798 0.85 +1.2 298,851 - GFF3798 0.85 -0.1 298,851 - GFF3798 0.85 +1.2 298,875 + +0.3 298,875 + -0.8 298,876 - -0.1 298,896 + -0.3 298,896 + -0.3 298,897 - +0.8 298,897 - +1.8 298,897 - +0.5 298,897 - -0.5 298,903 + +0.5 298,903 + -0.2 298,903 + +0.1 298,903 + +0.2 298,903 + +1.3 298,903 + +1.0 298,903 + -0.2 298,903 + -1.1 298,904 - -0.1 298,904 - -0.4 298,904 - -0.3 298,904 - -0.3 298,904 - -0.3 298,904 - +0.6 298,904 - -0.0 298,907 + +0.8 298,907 + -1.0 298,907 + -0.2 298,908 - +0.3 298,908 - +0.0 298,908 - +0.4 298,908 - +1.2 298,908 - +0.3 298,908 - -0.3 298,908 - +0.1 298,950 + +0.3 298,950 + -1.4 298,950 + -0.8 298,951 - -0.3 298,951 - -0.3 298,951 - +0.1 298,951 - +0.2 299,070 + -1.0 299,070 + -0.0 299,070 + -0.1 299,070 + -0.3 299,070 + +1.1 299,070 + -0.6 299,070 + +0.2 299,071 - -0.4 299,071 - +0.4 299,071 - -0.5 299,071 - +0.5 299,071 - +0.1 299,071 - +0.2 299,076 + +0.7 299,076 + +1.0 299,076 + +0.5 299,076 + +0.1 299,076 + -0.0 299,076 + -2.1 299,076 + +0.4 299,077 - -1.2 299,077 - +2.0 299,077 - +0.8 299,077 - +1.0 299,152 - GFF3799 0.14 -0.5 299,260 - GFF3799 0.23 +0.2 299,291 + GFF3799 0.25 -0.5 299,291 + GFF3799 0.25 +2.3 299,292 - GFF3799 0.25 +0.3 299,424 + GFF3799 0.36 -1.4 299,425 - GFF3799 0.36 -2.2
Or see this region's nucleotide sequence