Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3759 and GFF3760 are separated by 101 nucleotides GFF3760 and GFF3761 are separated by 57 nucleotides GFF3761 and GFF3762 overlap by 4 nucleotides
GFF3759 - Uridine kinase family protein YggC homolog, at 252,431 to 253,084
GFF3759
GFF3760 - putative lipoprotein, at 253,186 to 253,875
GFF3760
GFF3761 - Transcriptional regulator, MarR family, at 253,933 to 254,409
GFF3761
GFF3762 - hypothetical protein, at 254,406 to 255,440
GFF3762
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2 at 253.170 kb on + strand at 253.170 kb on + strand at 253.171 kb on - strand at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.303 kb on + strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.304 kb on - strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.348 kb on + strand, within GFF3760 at 253.349 kb on - strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.582 kb on + strand, within GFF3760 at 253.583 kb on - strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.844 kb on - strand at 253.844 kb on - strand at 253.844 kb on - strand at 253.844 kb on - strand at 254.659 kb on - strand, within GFF3762 at 254.659 kb on - strand, within GFF3762 at 254.892 kb on + strand, within GFF3762 at 254.893 kb on - strand, within GFF3762 at 255.108 kb on + strand, within GFF3762 at 255.108 kb on + strand, within GFF3762 at 255.109 kb on - strand, within GFF3762 at 255.109 kb on - strand, within GFF3762
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 253,170 + -0.7 253,170 + +0.8 253,171 - -0.5 253,303 + GFF3760 0.17 -0.2 253,303 + GFF3760 0.17 -0.7 253,303 + GFF3760 0.17 +1.2 253,303 + GFF3760 0.17 -0.0 253,303 + GFF3760 0.17 -1.4 253,303 + GFF3760 0.17 +0.0 253,303 + GFF3760 0.17 -1.5 253,304 - GFF3760 0.17 +1.5 253,304 - GFF3760 0.17 -1.9 253,304 - GFF3760 0.17 -0.4 253,304 - GFF3760 0.17 -1.5 253,304 - GFF3760 0.17 -0.2 253,348 + GFF3760 0.23 +0.1 253,348 + GFF3760 0.23 -0.7 253,348 + GFF3760 0.23 -0.7 253,348 + GFF3760 0.23 -0.1 253,349 - GFF3760 0.24 -0.9 253,408 + GFF3760 0.32 +0.2 253,408 + GFF3760 0.32 -0.0 253,408 + GFF3760 0.32 -1.1 253,408 + GFF3760 0.32 -0.0 253,408 + GFF3760 0.32 +0.6 253,408 + GFF3760 0.32 -0.4 253,408 + GFF3760 0.32 -0.2 253,408 + GFF3760 0.32 -0.8 253,408 + GFF3760 0.32 -0.1 253,408 + GFF3760 0.32 -0.6 253,408 + GFF3760 0.32 +0.5 253,408 + GFF3760 0.32 +0.8 253,409 - GFF3760 0.32 +0.6 253,409 - GFF3760 0.32 +1.8 253,409 - GFF3760 0.32 -0.0 253,409 - GFF3760 0.32 +0.8 253,409 - GFF3760 0.32 +2.2 253,409 - GFF3760 0.32 +0.0 253,409 - GFF3760 0.32 +0.2 253,409 - GFF3760 0.32 +1.8 253,409 - GFF3760 0.32 +1.0 253,582 + GFF3760 0.57 +0.5 253,583 - GFF3760 0.58 -0.3 253,714 + GFF3760 0.77 -0.4 253,714 + GFF3760 0.77 -1.0 253,714 + GFF3760 0.77 -0.7 253,714 + GFF3760 0.77 -0.7 253,715 - GFF3760 0.77 -0.4 253,715 - GFF3760 0.77 -0.2 253,715 - GFF3760 0.77 +1.8 253,715 - GFF3760 0.77 +0.4 253,715 - GFF3760 0.77 -0.9 253,715 - GFF3760 0.77 -1.0 253,715 - GFF3760 0.77 +0.8 253,843 + +0.1 253,843 + -0.0 253,843 + -0.2 253,843 + -0.1 253,843 + +0.5 253,843 + -0.5 253,843 + -0.5 253,844 - +1.4 253,844 - -0.1 253,844 - -1.0 253,844 - -0.3 254,659 - GFF3762 0.24 -0.6 254,659 - GFF3762 0.24 -0.9 254,892 + GFF3762 0.47 -0.1 254,893 - GFF3762 0.47 -0.3 255,108 + GFF3762 0.68 -0.9 255,108 + GFF3762 0.68 +0.3 255,109 - GFF3762 0.68 -0.5 255,109 - GFF3762 0.68 +0.1
Or see this region's nucleotide sequence