Strain Fitness in Variovorax sp. SCN45 around GFF3688

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
187,305	+				-1.5
187,659	+		GFF3688	0.81	-0.2
187,722	+				+0.8
187,722	+				-0.8
187,722	+				+0.4
187,722	+				-0.5
187,722	+				-0.2
187,723	-				+0.1
187,723	-				-0.2
187,723	-				+1.2
187,737	+				+0.1
187,737	+				-0.3
187,737	+				+0.6
187,738	-				+0.0
187,738	-				-0.4
187,738	-				-1.2
187,738	-				+1.2
187,738	-				-0.0
187,738	-				-0.5
187,738	-				+0.5
187,738	-				-1.5
187,738	-				+0.6
187,873	+				+1.2
187,873	+				+0.5
187,873	+				+0.2
187,873	+				+1.0
187,873	+				-0.5
187,873	+				+1.0
187,873	+				+0.1
187,874	-				+0.3
187,874	-				+0.7
187,874	-				+1.3
187,876	+				+0.5
187,877	-				-0.0
188,311	+		GFF3689	0.31	+0.8
188,312	-		GFF3689	0.31	+1.2
188,312	-		GFF3689	0.31	-0.1
188,312	-		GFF3689	0.31	-0.5
188,464	-		GFF3689	0.43	+0.8
188,464	-		GFF3689	0.43	-0.1
188,479	-		GFF3689	0.44	-0.5
188,479	-		GFF3689	0.44	-1.8
188,622	+		GFF3689	0.56	-0.8
188,622	+		GFF3689	0.56	-0.5
188,623	-		GFF3689	0.56	-1.0