Strain Fitness in Variovorax sp. SCN45 around GFF3684

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3682 and GFF3683 are separated by 8 nucleotidesGFF3683 and GFF3684 are separated by 38 nucleotidesGFF3684 and GFF3685 are separated by 33 nucleotides GFF3682 - ATP synthase F0 sector subunit b (EC 3.6.3.14), at 181,720 to 182,190 GFF3682 GFF3683 - ATP synthase delta chain (EC 3.6.3.14), at 182,199 to 182,729 GFF3683 GFF3684 - ATP synthase alpha chain (EC 3.6.3.14), at 182,768 to 184,381 GFF3684 GFF3685 - ATP synthase gamma chain (EC 3.6.3.14), at 184,415 to 185,290 GFF3685 Position (kb) 182 183 184 185Strain fitness (log2 ratio) -1 0 1at 182.191 kb on + strandat 182.745 kb on + strandat 182.745 kb on + strandat 182.745 kb on + strandat 182.745 kb on + strandat 185.369 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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182,191 + -0.2
182,745 + +1.6
182,745 + +0.3
182,745 + +0.5
182,745 + +0.6
185,369 + +0.3
185,377 + -0.3
185,377 + -0.0
185,377 + -0.3
185,377 + +0.5
185,377 + +0.4
185,377 + -0.1

Or see this region's nucleotide sequence