Strain Fitness in Variovorax sp. SCN45 around GFF3682

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3680 and GFF3681 are separated by 60 nucleotidesGFF3681 and GFF3682 are separated by 75 nucleotidesGFF3682 and GFF3683 are separated by 8 nucleotidesGFF3683 and GFF3684 are separated by 38 nucleotides GFF3680 - ATP synthase F0 sector subunit a (EC 3.6.3.14), at 180,451 to 181,320 GFF3680 GFF3681 - ATP synthase F0 sector subunit c (EC 3.6.3.14), at 181,381 to 181,644 GFF3681 GFF3682 - ATP synthase F0 sector subunit b (EC 3.6.3.14), at 181,720 to 182,190 GFF3682 GFF3683 - ATP synthase delta chain (EC 3.6.3.14), at 182,199 to 182,729 GFF3683 GFF3684 - ATP synthase alpha chain (EC 3.6.3.14), at 182,768 to 184,381 GFF3684 Position (kb) 181 182 183Strain fitness (log2 ratio) -1 0 1at 181.662 kb on + strandat 181.662 kb on + strandat 181.662 kb on + strandat 181.662 kb on + strandat 181.662 kb on + strandat 182.191 kb on + strandat 182.745 kb on + strandat 182.745 kb on + strandat 182.745 kb on + strandat 182.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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181,662 + +0.8
181,662 + +0.5
181,662 + +0.3
181,662 + -0.6
181,662 + +0.2
182,191 + -0.2
182,745 + +1.6
182,745 + +0.3
182,745 + +0.5
182,745 + +0.6

Or see this region's nucleotide sequence