Strain Fitness in Variovorax sp. SCN45 around GFF3681

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3679 and GFF3680 are separated by 4 nucleotidesGFF3680 and GFF3681 are separated by 60 nucleotidesGFF3681 and GFF3682 are separated by 75 nucleotidesGFF3682 and GFF3683 are separated by 8 nucleotides GFF3679 - ATP synthase protein I, at 179,961 to 180,446 GFF3679 GFF3680 - ATP synthase F0 sector subunit a (EC 3.6.3.14), at 180,451 to 181,320 GFF3680 GFF3681 - ATP synthase F0 sector subunit c (EC 3.6.3.14), at 181,381 to 181,644 GFF3681 GFF3682 - ATP synthase F0 sector subunit b (EC 3.6.3.14), at 181,720 to 182,190 GFF3682 GFF3683 - ATP synthase delta chain (EC 3.6.3.14), at 182,199 to 182,729 GFF3683 Position (kb) 181 182Strain fitness (log2 ratio) -1 0 1at 181.662 kb on + strandat 181.662 kb on + strandat 181.662 kb on + strandat 181.662 kb on + strandat 181.662 kb on + strandat 182.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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181,662 + +0.8
181,662 + +0.5
181,662 + +0.3
181,662 + -0.6
181,662 + +0.2
182,191 + -0.2

Or see this region's nucleotide sequence