Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3678 and GFF3679 are separated by 157 nucleotides GFF3679 and GFF3680 are separated by 4 nucleotides GFF3680 and GFF3681 are separated by 60 nucleotides GFF3681 and GFF3682 are separated by 75 nucleotides GFF3682 and GFF3683 are separated by 8 nucleotides
GFF3678 - D-alanine aminotransferase (EC 2.6.1.21), at 178,910 to 179,803
GFF3678
GFF3679 - ATP synthase protein I, at 179,961 to 180,446
GFF3679
GFF3680 - ATP synthase F0 sector subunit a (EC 3.6.3.14), at 180,451 to 181,320
GFF3680
GFF3681 - ATP synthase F0 sector subunit c (EC 3.6.3.14), at 181,381 to 181,644
GFF3681
GFF3682 - ATP synthase F0 sector subunit b (EC 3.6.3.14), at 181,720 to 182,190
GFF3682
GFF3683 - ATP synthase delta chain (EC 3.6.3.14), at 182,199 to 182,729
GFF3683
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.665 kb on - strand, within GFF3678 at 179.665 kb on - strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.748 kb on + strand at 179.748 kb on + strand at 179.749 kb on - strand at 179.749 kb on - strand at 179.749 kb on - strand at 179.763 kb on + strand at 179.763 kb on + strand at 179.763 kb on + strand at 179.764 kb on - strand at 179.794 kb on + strand at 179.795 kb on - strand at 179.795 kb on - strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.904 kb on + strand at 179.904 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.909 kb on - strand at 179.909 kb on - strand at 179.910 kb on + strand at 179.910 kb on + strand at 180.174 kb on + strand, within GFF3679 at 181.662 kb on + strand at 181.662 kb on + strand at 181.662 kb on + strand at 181.662 kb on + strand at 181.662 kb on + strand at 182.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 179,511 + GFF3678 0.67 -1.0 179,511 + GFF3678 0.67 +0.5 179,511 + GFF3678 0.67 +0.1 179,512 - GFF3678 0.67 +1.2 179,512 - GFF3678 0.67 +0.8 179,512 - GFF3678 0.67 +1.5 179,664 + GFF3678 0.84 -0.1 179,664 + GFF3678 0.84 +1.4 179,664 + GFF3678 0.84 +0.6 179,665 - GFF3678 0.84 -0.7 179,665 - GFF3678 0.84 -1.5 179,676 + GFF3678 0.86 +1.5 179,676 + GFF3678 0.86 -0.1 179,676 + GFF3678 0.86 -0.3 179,676 + GFF3678 0.86 -0.8 179,676 + GFF3678 0.86 +1.2 179,676 + GFF3678 0.86 -1.1 179,676 + GFF3678 0.86 +0.2 179,676 + GFF3678 0.86 +0.1 179,676 + GFF3678 0.86 -2.3 179,677 - GFF3678 0.86 +0.4 179,677 - GFF3678 0.86 +0.8 179,677 - GFF3678 0.86 +1.3 179,677 - GFF3678 0.86 -0.4 179,677 - GFF3678 0.86 +0.2 179,677 - GFF3678 0.86 -1.7 179,677 - GFF3678 0.86 -0.5 179,677 - GFF3678 0.86 +0.8 179,677 - GFF3678 0.86 +0.0 179,677 - GFF3678 0.86 -1.3 179,677 - GFF3678 0.86 -1.0 179,677 - GFF3678 0.86 -2.2 179,677 - GFF3678 0.86 +0.2 179,682 + GFF3678 0.86 +0.3 179,682 + GFF3678 0.86 -0.0 179,682 + GFF3678 0.86 -0.2 179,682 + GFF3678 0.86 -1.2 179,682 + GFF3678 0.86 -0.8 179,682 + GFF3678 0.86 -0.6 179,682 + GFF3678 0.86 -0.7 179,682 + GFF3678 0.86 +0.4 179,683 - GFF3678 0.86 +0.5 179,683 - GFF3678 0.86 -0.1 179,683 - GFF3678 0.86 -0.0 179,683 - GFF3678 0.86 +0.2 179,683 - GFF3678 0.86 -0.4 179,683 - GFF3678 0.86 -1.2 179,748 + -0.9 179,748 + +2.6 179,749 - -0.1 179,749 - +0.5 179,749 - +0.1 179,763 + -0.0 179,763 + +0.3 179,763 + +0.2 179,764 - -0.1 179,794 + +0.3 179,795 - -0.2 179,795 - +0.2 179,812 + -0.6 179,812 + -0.5 179,812 + +0.6 179,812 + -0.2 179,812 + +0.2 179,812 + +0.9 179,812 + -1.4 179,813 - +2.1 179,813 - +0.0 179,813 - -2.7 179,813 - +0.2 179,813 - -0.2 179,813 - +0.4 179,813 - +0.2 179,813 - -0.6 179,813 - -0.8 179,813 - +0.8 179,904 + -0.2 179,904 + +1.3 179,908 + +0.9 179,908 + -0.2 179,908 + +0.4 179,908 + +0.2 179,908 + -0.2 179,908 + +0.2 179,909 - -0.5 179,909 - +0.2 179,910 + -0.4 179,910 + -0.8 180,174 + GFF3679 0.44 -0.5 181,662 + +0.8 181,662 + +0.5 181,662 + +0.3 181,662 + -0.6 181,662 + +0.2 182,191 + -0.2
Or see this region's nucleotide sequence