Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3671 and GFF3672 are separated by 194 nucleotides GFF3672 and GFF3673 are separated by 15 nucleotides GFF3673 and GFF3674 are separated by 21 nucleotides GFF3674 and GFF3675 are separated by 7 nucleotides GFF3675 and GFF3676 overlap by 4 nucleotides
GFF3671 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 173,177 to 174,709
GFF3671
GFF3672 - no description, at 174,904 to 175,146
GFF3672
GFF3673 - no description, at 175,162 to 175,656
GFF3673
GFF3674 - Lipoyl synthase (EC 2.8.1.8), at 175,678 to 176,679
GFF3674
GFF3675 - Octanoate-[acyl-carrier-protein]-protein-N-octano yltransferase (EC 2.3.1.181), at 176,687 to 177,415
GFF3675
GFF3676 - Outer membrane protein romA, at 177,412 to 178,608
GFF3676
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1
2 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.036 kb on + strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.037 kb on - strand, within GFF3672 at 175.060 kb on + strand, within GFF3672 at 175.060 kb on + strand, within GFF3672 at 175.060 kb on + strand, within GFF3672 at 175.060 kb on + strand, within GFF3672 at 175.060 kb on + strand, within GFF3672 at 175.060 kb on + strand, within GFF3672 at 175.061 kb on - strand, within GFF3672 at 175.061 kb on - strand, within GFF3672 at 175.061 kb on - strand, within GFF3672 at 175.169 kb on + strand at 175.169 kb on + strand at 175.169 kb on + strand at 175.170 kb on - strand at 175.170 kb on - strand at 175.170 kb on - strand at 175.170 kb on - strand at 175.170 kb on - strand at 175.170 kb on - strand at 175.170 kb on - strand at 175.170 kb on - strand at 175.564 kb on + strand, within GFF3673 at 175.564 kb on + strand, within GFF3673 at 175.564 kb on + strand, within GFF3673 at 175.564 kb on + strand, within GFF3673 at 175.564 kb on + strand, within GFF3673 at 175.564 kb on + strand, within GFF3673 at 175.564 kb on + strand, within GFF3673 at 175.564 kb on + strand, within GFF3673 at 175.565 kb on - strand, within GFF3673 at 175.565 kb on - strand, within GFF3673 at 175.565 kb on - strand, within GFF3673 at 175.565 kb on - strand, within GFF3673 at 175.565 kb on - strand, within GFF3673 at 175.565 kb on - strand, within GFF3673 at 175.565 kb on - strand, within GFF3673 at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 177.662 kb on + strand, within GFF3676 at 177.662 kb on + strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 175,036 + GFF3672 0.54 -1.0 175,036 + GFF3672 0.54 +0.5 175,036 + GFF3672 0.54 +1.0 175,036 + GFF3672 0.54 +0.3 175,036 + GFF3672 0.54 +0.3 175,036 + GFF3672 0.54 -0.1 175,036 + GFF3672 0.54 +0.6 175,036 + GFF3672 0.54 -0.2 175,036 + GFF3672 0.54 +0.0 175,036 + GFF3672 0.54 -1.0 175,036 + GFF3672 0.54 -1.1 175,036 + GFF3672 0.54 +0.4 175,036 + GFF3672 0.54 +0.5 175,037 - GFF3672 0.55 +0.8 175,037 - GFF3672 0.55 -0.8 175,037 - GFF3672 0.55 +0.0 175,037 - GFF3672 0.55 -0.9 175,037 - GFF3672 0.55 -0.3 175,037 - GFF3672 0.55 +0.3 175,037 - GFF3672 0.55 +0.4 175,037 - GFF3672 0.55 +1.4 175,037 - GFF3672 0.55 -0.5 175,037 - GFF3672 0.55 -1.7 175,037 - GFF3672 0.55 -0.0 175,037 - GFF3672 0.55 -0.3 175,037 - GFF3672 0.55 +0.8 175,037 - GFF3672 0.55 -1.4 175,037 - GFF3672 0.55 -0.3 175,037 - GFF3672 0.55 -0.1 175,037 - GFF3672 0.55 +1.5 175,037 - GFF3672 0.55 +1.0 175,037 - GFF3672 0.55 -0.7 175,037 - GFF3672 0.55 -0.3 175,037 - GFF3672 0.55 -0.7 175,037 - GFF3672 0.55 -0.2 175,060 + GFF3672 0.64 -1.1 175,060 + GFF3672 0.64 +0.2 175,060 + GFF3672 0.64 -0.1 175,060 + GFF3672 0.64 +0.4 175,060 + GFF3672 0.64 -1.7 175,060 + GFF3672 0.64 +0.0 175,061 - GFF3672 0.65 -1.2 175,061 - GFF3672 0.65 +0.3 175,061 - GFF3672 0.65 +0.4 175,169 + -0.3 175,169 + +0.3 175,169 + -0.0 175,170 - -0.9 175,170 - -0.6 175,170 - -0.3 175,170 - +0.6 175,170 - +0.3 175,170 - -0.6 175,170 - +0.4 175,170 - -0.6 175,564 + GFF3673 0.81 -0.2 175,564 + GFF3673 0.81 +0.3 175,564 + GFF3673 0.81 -0.0 175,564 + GFF3673 0.81 -0.3 175,564 + GFF3673 0.81 -0.1 175,564 + GFF3673 0.81 -0.0 175,564 + GFF3673 0.81 -0.5 175,564 + GFF3673 0.81 -1.2 175,565 - GFF3673 0.81 +0.4 175,565 - GFF3673 0.81 -1.2 175,565 - GFF3673 0.81 +0.2 175,565 - GFF3673 0.81 -0.1 175,565 - GFF3673 0.81 -0.9 175,565 - GFF3673 0.81 +0.6 175,565 - GFF3673 0.81 +0.9 176,683 + +1.4 176,683 + -0.8 176,683 + +0.1 176,683 + -1.0 176,683 + -1.2 176,683 + +0.8 176,684 - +0.1 176,684 - -0.8 176,684 - -0.7 176,684 - +1.6 176,684 - +0.3 176,684 - +0.2 176,684 - +1.8 176,684 - -1.2 176,684 - +0.6 176,684 - +0.1 176,684 - +0.6 176,684 - +0.2 176,684 - -1.0 177,662 + GFF3676 0.21 +0.5 177,662 + GFF3676 0.21 -0.1 177,663 - GFF3676 0.21 -0.1 177,663 - GFF3676 0.21 +0.2 177,663 - GFF3676 0.21 -0.0 177,663 - GFF3676 0.21 -0.1
Or see this region's nucleotide sequence