Strain Fitness in Variovorax sp. SCN45 around GFF3652

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
155,375	+		GFF3650	0.74	-0.8
155,375	+		GFF3650	0.74	+0.6
155,375	+		GFF3650	0.74	-0.7
155,375	+		GFF3650	0.74	-0.1
155,375	+		GFF3650	0.74	+0.4
155,375	+		GFF3650	0.74	-0.1
155,375	+		GFF3650	0.74	+1.4
155,375	+		GFF3650	0.74	-0.4
155,375	+		GFF3650	0.74	-0.1
155,375	+		GFF3650	0.74	+2.5
155,375	+		GFF3650	0.74	+0.7
155,376	-		GFF3650	0.74	-0.2
155,376	-		GFF3650	0.74	+0.2
155,376	-		GFF3650	0.74	+1.2
155,425	+		GFF3650	0.84	-0.3
155,426	-		GFF3650	0.84	+0.4
155,426	-		GFF3650	0.84	-0.2
155,426	-		GFF3650	0.84	+1.1
155,509	+				+0.0
155,510	-				+0.4
155,510	-				-0.6
155,510	-				-0.0
155,524	-				+0.6
155,534	+				-0.6
155,600	+				-0.3
155,601	+				+0.2
155,601	+				-0.4
155,601	+				+1.4
155,601	+				-1.5
155,601	+				+0.8
155,601	+				+0.1
155,601	+				-1.4
155,601	+				+0.4
155,601	+				+0.0
155,601	+				+0.8
155,601	+				+0.8
155,601	+				-0.4
155,602	-				-0.2
155,602	-				-0.2
155,602	-				-0.9
155,602	-				+1.0
155,602	-				-0.4
155,602	-				+0.3
155,602	-				+0.5
155,602	-				+0.9
155,602	-				+0.2
155,605	+				-0.7
155,605	+				-0.4
155,605	+				+0.1
155,605	+				-1.0
155,605	+				-0.1
155,605	+				+1.4
155,605	+				-0.2
155,605	+				+0.1
155,605	+				+0.3
155,605	+				-1.4
155,605	+				+0.4
155,605	+				+0.1
155,605	+				-0.3
155,605	+				-1.9
155,605	+				-1.7
155,605	+				-0.0
155,605	+				-1.5
155,605	+				+0.3
155,605	+				+0.7
155,605	+				-0.2
155,605	+				-1.3
155,605	+				-1.0
155,605	+				-0.3
155,605	+				+0.2
155,605	+				-0.1
155,605	+				-0.5
155,605	+				+1.0
155,605	+				+0.4
155,605	+				+0.1
155,605	+				-0.1
155,605	+				-0.4
155,606	-				+0.0
155,606	-				+0.2
155,606	-				+0.6
155,606	-				+0.1
155,606	-				-0.6
155,606	-				-0.1
155,606	-				-0.2
155,606	-				+0.3
155,606	-				+1.0
155,606	-				-0.1
155,606	-				+0.0
155,606	-				+1.2
155,606	-				+0.1
155,606	-				+0.8
155,606	-				-0.6
155,606	-				-0.2
155,606	-				+1.5
155,606	-				-0.4
155,606	-				-0.3
155,628	+				+0.1
155,628	+				-0.5
155,628	+				-0.4
155,967	+		GFF3651	0.68	-1.2
155,967	+		GFF3651	0.68	-0.5
155,968	-		GFF3651	0.69	+0.8
155,968	-		GFF3651	0.69	-1.4
156,108	+				+0.8
156,108	+				+0.3
156,108	+				+0.1
156,108	+				-1.4
156,108	+				+0.7
156,108	+				-0.3
156,108	+				-0.2
156,108	+				-1.5
156,108	+				-0.6
156,108	+				-0.1
156,108	+				+0.4
156,109	-				-0.0
156,109	-				-0.0
156,109	-				-0.8
156,109	-				-0.3
156,109	-				+0.6
156,109	-				+0.1
156,109	-				+0.2
156,109	-				-0.8
156,109	-				-0.6
156,346	+				-0.5
156,346	+				-0.1
156,347	-				+2.0
156,347	-				-0.8
156,347	-				-1.2
156,452	+				+0.1
156,452	+				-0.7
156,452	+				+0.1
156,452	+				+0.6
156,452	+				-1.9
156,452	+				-0.4
156,452	+				+0.1
156,452	+				-0.3
156,452	+				-0.3
156,452	+				-1.7
156,452	+				-0.5
156,452	+				+0.0
156,452	+				-0.6
156,452	+				-0.3
156,453	-				-0.3
156,453	-				-0.1
156,453	-				-0.7
156,453	-				-1.2
156,453	-				+0.1
156,671	+		GFF3653	0.17	-1.4
156,671	+		GFF3653	0.17	+0.3
156,671	+		GFF3653	0.17	+0.2
156,672	-		GFF3653	0.17	+0.5
156,672	-		GFF3653	0.17	-0.8
156,672	-		GFF3653	0.17	-0.4
156,672	-		GFF3653	0.17	+0.8
156,672	-		GFF3653	0.17	-0.4
156,672	-		GFF3653	0.17	+1.8
156,743	+		GFF3653	0.21	-0.4
156,743	+		GFF3653	0.21	-0.5
156,744	-		GFF3653	0.21	+0.3
156,744	-		GFF3653	0.21	-0.0
156,744	-		GFF3653	0.21	-0.5
157,169	+		GFF3653	0.45	+0.3
157,281	-		GFF3653	0.51	-0.4