Strain Fitness in Variovorax sp. SCN45 around GFF3628

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
138,499	+		GFF3627	0.41	+0.5
138,499	+		GFF3627	0.41	+0.0
138,499	+		GFF3627	0.41	-0.2
138,499	+		GFF3627	0.41	-1.0
138,499	+		GFF3627	0.41	+0.9
138,499	+		GFF3627	0.41	+0.0
138,499	+		GFF3627	0.41	-0.3
138,499	+		GFF3627	0.41	+0.1
138,499	+		GFF3627	0.41	+0.2
138,499	+		GFF3627	0.41	-0.7
138,499	+		GFF3627	0.41	+0.2
138,499	+		GFF3627	0.41	+1.0
138,499	+		GFF3627	0.41	-1.7
138,499	+		GFF3627	0.41	-1.4
138,499	+		GFF3627	0.41	-0.0
138,499	+		GFF3627	0.41	-0.1
138,499	+		GFF3627	0.41	+0.9
138,499	+		GFF3627	0.41	+1.4
138,499	+		GFF3627	0.41	+0.0
138,499	+		GFF3627	0.41	-0.7
138,500	-		GFF3627	0.41	-1.7
138,500	-		GFF3627	0.41	-0.8
138,500	-		GFF3627	0.41	-1.1
138,500	-		GFF3627	0.41	-0.1
138,500	-		GFF3627	0.41	-0.6
138,500	-		GFF3627	0.41	+0.8
138,500	-		GFF3627	0.41	+0.2
138,500	-		GFF3627	0.41	+0.3
138,500	-		GFF3627	0.41	+0.8
138,500	-		GFF3627	0.41	-0.2
138,534	+		GFF3627	0.44	+0.3
138,534	+		GFF3627	0.44	+1.8
138,534	+		GFF3627	0.44	-0.3
138,534	+		GFF3627	0.44	-1.5
138,535	-		GFF3627	0.44	+0.1
138,535	-		GFF3627	0.44	-0.6
138,604	+		GFF3627	0.49	+0.2
138,604	+		GFF3627	0.49	+0.0
138,604	+		GFF3627	0.49	-0.6
138,604	+		GFF3627	0.49	-1.6
138,604	+		GFF3627	0.49	+0.9
138,604	+		GFF3627	0.49	+0.5
138,604	+		GFF3627	0.49	-0.5
138,604	+		GFF3627	0.49	-0.1
138,604	+		GFF3627	0.49	-1.7
138,604	+		GFF3627	0.49	+0.4
138,604	+		GFF3627	0.49	+1.0
138,605	-		GFF3627	0.50	-0.2
138,605	-		GFF3627	0.50	-0.3
138,605	-		GFF3627	0.50	-0.1
138,605	-		GFF3627	0.50	+0.2
138,605	-		GFF3627	0.50	+1.1
138,605	-		GFF3627	0.50	-0.7
138,605	-		GFF3627	0.50	-0.5
138,605	-		GFF3627	0.50	-1.0
138,605	-		GFF3627	0.50	-0.5
138,605	-		GFF3627	0.50	-0.8
138,605	-		GFF3627	0.50	-2.1
138,605	-		GFF3627	0.50	-0.4
138,605	-		GFF3627	0.50	+0.6
138,605	-		GFF3627	0.50	+0.2
138,605	-		GFF3627	0.50	+0.3
138,607	+		GFF3627	0.50	-0.2
138,607	+		GFF3627	0.50	-1.7
138,607	+		GFF3627	0.50	+0.2
138,607	+		GFF3627	0.50	+0.3
138,607	+		GFF3627	0.50	-1.8
138,607	+		GFF3627	0.50	+1.0
138,607	+		GFF3627	0.50	-0.4
138,607	+		GFF3627	0.50	-0.0
138,607	+		GFF3627	0.50	-0.0
138,607	+		GFF3627	0.50	-0.0
138,607	+		GFF3627	0.50	+0.0
138,607	+		GFF3627	0.50	+0.2
138,607	+		GFF3627	0.50	-0.1
138,607	+		GFF3627	0.50	-1.3
138,608	-		GFF3627	0.50	-1.1
138,608	-		GFF3627	0.50	+0.1
138,608	-		GFF3627	0.50	-0.8
138,608	-		GFF3627	0.50	+1.4
138,608	-		GFF3627	0.50	+0.1
138,608	-		GFF3627	0.50	-0.1
138,608	-		GFF3627	0.50	-0.5
138,608	-		GFF3627	0.50	-1.5
138,608	-		GFF3627	0.50	+1.8
138,608	-		GFF3627	0.50	+0.5
138,608	-		GFF3627	0.50	-0.5
138,608	-		GFF3627	0.50	+0.1
138,608	-		GFF3627	0.50	+2.1
138,608	-		GFF3627	0.50	+0.5
138,608	-		GFF3627	0.50	+0.1
138,608	-		GFF3627	0.50	-1.0
138,608	-		GFF3627	0.50	-0.2
138,608	-		GFF3627	0.50	-1.3
138,608	-		GFF3627	0.50	-0.8
138,608	-		GFF3627	0.50	-0.1
138,608	-		GFF3627	0.50	+0.5
138,608	-		GFF3627	0.50	-0.0
138,622	+		GFF3627	0.51	-1.5
138,622	+		GFF3627	0.51	-0.2
138,622	+		GFF3627	0.51	-0.9
138,622	+		GFF3627	0.51	+0.8
138,622	+		GFF3627	0.51	+1.4
138,622	+		GFF3627	0.51	-1.3
138,622	+		GFF3627	0.51	-0.5
138,622	+		GFF3627	0.51	+0.6
138,622	+		GFF3627	0.51	-0.1
138,622	+		GFF3627	0.51	-0.3
138,622	+		GFF3627	0.51	+0.4
138,622	+		GFF3627	0.51	-0.3
138,622	+		GFF3627	0.51	-2.2
138,623	-		GFF3627	0.51	-0.9
138,623	-		GFF3627	0.51	+0.4
138,623	-		GFF3627	0.51	+0.0
138,623	-		GFF3627	0.51	+0.5
138,623	-		GFF3627	0.51	-0.4
138,623	-		GFF3627	0.51	+2.0
138,623	-		GFF3627	0.51	+0.1
138,623	-		GFF3627	0.51	+0.7
138,623	-		GFF3627	0.51	-0.7
138,623	-		GFF3627	0.51	-0.2
138,623	-		GFF3627	0.51	+0.2
138,623	-		GFF3627	0.51	-0.1
138,714	+		GFF3627	0.59	-1.1
138,715	-		GFF3627	0.59	+0.1
138,730	+		GFF3627	0.60	+1.2
138,730	+		GFF3627	0.60	+0.0
138,730	+		GFF3627	0.60	-0.8
138,731	-		GFF3627	0.60	-1.2
138,840	+		GFF3627	0.70	+0.2
138,848	+		GFF3627	0.70	+1.0
138,848	+		GFF3627	0.70	-0.2
138,848	+		GFF3627	0.70	-0.2
138,848	+		GFF3627	0.70	+0.5
138,848	+		GFF3627	0.70	+0.8
138,849	-		GFF3627	0.70	-2.2
138,849	-		GFF3627	0.70	-0.5
138,849	-		GFF3627	0.70	-0.0
138,849	-		GFF3627	0.70	-0.2
138,849	-		GFF3627	0.70	-0.3
138,862	+		GFF3627	0.72	+0.2
138,862	+		GFF3627	0.72	+0.1
138,862	+		GFF3627	0.72	-0.4
138,863	-		GFF3627	0.72	-0.5
138,863	-		GFF3627	0.72	+1.1
138,863	-		GFF3627	0.72	-0.1
138,871	+		GFF3627	0.72	+0.7
138,871	+		GFF3627	0.72	-0.5
138,871	+		GFF3627	0.72	-0.4
138,871	+		GFF3627	0.72	-0.4
138,872	-		GFF3627	0.72	+1.4
138,872	-		GFF3627	0.72	-0.9
138,872	-		GFF3627	0.72	-0.9
138,872	-		GFF3627	0.72	-0.1
139,192	+				+0.1
139,192	+				-0.1
139,192	+				-0.4
139,192	+				+0.1
139,192	+				-0.8
139,193	-				+0.8
139,193	-				+0.6
139,193	-				+0.7
139,193	-				+0.4
139,193	-				+0.4
139,193	-				-0.9
139,193	-				+0.6
139,193	-				+0.6
139,193	-				+0.4
139,193	-				-0.2
139,193	-				-0.6
139,193	-				-0.2
139,193	-				-0.5
139,193	-				+0.2
139,193	-				+0.6
139,193	-				+0.1
139,201	+				+0.6
139,201	+				-0.2
139,201	+				-0.2
139,201	+				+0.4
139,201	+				-0.4
139,202	-				-0.5
139,202	-				+0.0
139,202	-				+0.4
139,202	-				-0.1
139,202	-				-0.5
139,205	+				-0.0
139,205	+				+0.3
139,205	+				-1.1
139,205	+				+1.0
139,205	+				+0.2
139,205	+				-1.9
139,205	+				+0.9
139,205	+				+0.2
139,205	+				+0.6
139,205	+				+0.2
139,205	+				-0.4
139,205	+				-0.1
139,205	+				-0.1
139,205	+				-0.6
139,205	+				+0.8
139,205	+				+0.8
139,205	+				-0.5
139,205	+				-0.6
139,206	+				-0.4
139,206	-				-0.1
139,206	-				-1.5
139,206	-				-0.3
139,206	-				-0.8
139,206	-				-0.0
139,206	-				-1.0
139,206	-				+0.6
139,206	-				+0.0
139,206	-				-0.2
139,206	-				+0.0
139,206	-				+0.5
139,206	-				-0.8
139,206	-				+0.8
139,206	-				+0.9
139,206	-				-1.0
139,206	-				+0.8
139,206	-				-0.3
139,206	-				-0.1
139,206	-				-0.3
139,206	-				+0.7
139,206	-				-0.0
139,206	-				+0.1
139,206	-				-0.6
139,206	-				+2.2
139,278	+				-0.2
139,777	+				+0.2
139,777	+				-0.8
139,777	+				-1.0
139,777	+				-0.8
139,777	+				+1.2
140,404	+				+1.8
140,404	+				-0.1