Strain Fitness in Variovorax sp. SCN45 around GFF3622

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3621 and GFF3622 are separated by 19 nucleotidesGFF3622 and GFF3623 are separated by 367 nucleotidesGFF3623 and GFF3624 are separated by 11 nucleotides GFF3621 - Magnesium and cobalt transport protein CorA, at 132,815 to 133,981 GFF3621 GFF3622 - Porphobilinogen synthase (EC 4.2.1.24), at 134,001 to 134,987 GFF3622 GFF3623 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 135,355 to 135,783 GFF3623 GFF3624 - Putative transmembrane protein, at 135,795 to 136,952 GFF3624 Position (kb) 134 135Strain fitness (log2 ratio) -2 -1 0 1 2 3at 133.374 kb on + strand, within GFF3621at 133.375 kb on - strand, within GFF3621at 133.734 kb on + strand, within GFF3621at 133.734 kb on + strand, within GFF3621at 133.734 kb on + strand, within GFF3621at 133.735 kb on - strand, within GFF3621at 133.735 kb on - strand, within GFF3621at 133.735 kb on - strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.746 kb on + strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.747 kb on - strand, within GFF3621at 133.752 kb on + strand, within GFF3621at 133.752 kb on + strand, within GFF3621at 133.752 kb on + strand, within GFF3621at 133.753 kb on - strand, within GFF3621at 133.890 kb on + strandat 133.890 kb on + strandat 133.890 kb on + strandat 133.891 kb on - strandat 133.891 kb on - strandat 134.002 kb on + strandat 134.002 kb on + strandat 134.002 kb on + strandat 134.002 kb on + strandat 134.002 kb on + strandat 134.002 kb on + strandat 134.002 kb on + strandat 134.003 kb on - strandat 134.003 kb on - strandat 134.003 kb on - strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.014 kb on + strandat 135.015 kb on - strandat 135.015 kb on - strandat 135.015 kb on - strandat 135.015 kb on - strandat 135.015 kb on - strandat 135.016 kb on + strandat 135.016 kb on + strandat 135.016 kb on + strandat 135.016 kb on + strandat 135.017 kb on - strandat 135.017 kb on - strandat 135.083 kb on + strandat 135.083 kb on + strandat 135.087 kb on + strandat 135.088 kb on + strandat 135.088 kb on + strandat 135.088 kb on + strandat 135.088 kb on + strandat 135.095 kb on + strandat 135.095 kb on + strandat 135.096 kb on - strandat 135.101 kb on + strandat 135.101 kb on + strandat 135.101 kb on + strandat 135.123 kb on + strandat 135.123 kb on + strandat 135.123 kb on + strandat 135.123 kb on + strandat 135.313 kb on - strandat 135.344 kb on - strandat 135.344 kb on - strandat 135.344 kb on - strandat 135.852 kb on + strandat 135.852 kb on + strandat 135.853 kb on - strandat 135.853 kb on - strandat 135.853 kb on - strandat 135.870 kb on + strandat 135.882 kb on + strandat 135.882 kb on + strandat 135.927 kb on + strand, within GFF3624at 135.927 kb on + strand, within GFF3624at 135.927 kb on + strand, within GFF3624at 135.927 kb on + strand, within GFF3624at 135.927 kb on + strand, within GFF3624at 135.927 kb on + strand, within GFF3624at 135.928 kb on - strand, within GFF3624at 135.928 kb on - strand, within GFF3624at 135.928 kb on - strand, within GFF3624at 135.928 kb on - strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.951 kb on + strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624at 135.952 kb on - strand, within GFF3624

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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133,374 + GFF3621 0.48 -0.5
133,375 - GFF3621 0.48 +0.0
133,734 + GFF3621 0.79 -0.2
133,734 + GFF3621 0.79 +0.8
133,734 + GFF3621 0.79 -1.0
133,735 - GFF3621 0.79 +3.4
133,735 - GFF3621 0.79 -1.1
133,735 - GFF3621 0.79 -1.0
133,746 + GFF3621 0.80 +0.9
133,746 + GFF3621 0.80 -0.1
133,746 + GFF3621 0.80 -0.1
133,746 + GFF3621 0.80 +0.3
133,746 + GFF3621 0.80 -0.8
133,746 + GFF3621 0.80 +0.2
133,746 + GFF3621 0.80 -0.2
133,746 + GFF3621 0.80 -0.3
133,746 + GFF3621 0.80 -0.3
133,746 + GFF3621 0.80 +0.9
133,746 + GFF3621 0.80 +0.3
133,746 + GFF3621 0.80 -0.8
133,746 + GFF3621 0.80 -0.2
133,746 + GFF3621 0.80 +0.3
133,747 - GFF3621 0.80 +0.1
133,747 - GFF3621 0.80 -0.8
133,747 - GFF3621 0.80 -0.1
133,747 - GFF3621 0.80 +0.8
133,747 - GFF3621 0.80 -0.0
133,747 - GFF3621 0.80 -0.2
133,747 - GFF3621 0.80 -0.5
133,747 - GFF3621 0.80 -0.2
133,747 - GFF3621 0.80 +0.7
133,747 - GFF3621 0.80 +0.9
133,747 - GFF3621 0.80 -0.1
133,747 - GFF3621 0.80 +0.0
133,747 - GFF3621 0.80 -1.3
133,752 + GFF3621 0.80 +0.2
133,752 + GFF3621 0.80 -1.4
133,752 + GFF3621 0.80 +0.0
133,753 - GFF3621 0.80 -1.2
133,890 + +1.8
133,890 + -0.4
133,890 + -0.7
133,891 - -0.5
133,891 - +1.8
134,002 + -0.5
134,002 + -0.5
134,002 + -0.7
134,002 + -1.3
134,002 + -0.3
134,002 + -0.3
134,002 + +1.0
134,003 - -0.5
134,003 - +0.6
134,003 - -0.2
135,014 + -1.4
135,014 + +0.8
135,014 + +0.2
135,014 + +1.8
135,014 + +0.2
135,014 + +1.8
135,014 + -0.2
135,014 + -0.2
135,014 + -0.9
135,014 + +0.8
135,014 + -1.0
135,014 + -0.2
135,014 + +0.8
135,015 - +0.2
135,015 - -1.5
135,015 - -0.8
135,015 - +0.2
135,015 - -0.5
135,016 + +0.8
135,016 + +1.2
135,016 + -0.3
135,016 + -1.0
135,017 - +0.2
135,017 - +0.2
135,083 + +0.3
135,083 + +0.8
135,087 + +0.8
135,088 + -0.3
135,088 + -0.1
135,088 + -0.5
135,088 + -0.1
135,095 + -0.1
135,095 + -2.3
135,096 - +1.8
135,101 + +1.4
135,101 + -0.8
135,101 + -1.0
135,123 + +0.0
135,123 + +0.3
135,123 + +1.0
135,123 + -1.0
135,313 - -1.4
135,344 - -0.2
135,344 - -0.2
135,344 - -1.2
135,852 + -2.0
135,852 + -0.5
135,853 - -1.4
135,853 - -0.0
135,853 - +0.2
135,870 + -0.2
135,882 + -2.5
135,882 + +0.8
135,927 + GFF3624 0.11 +0.8
135,927 + GFF3624 0.11 +2.8
135,927 + GFF3624 0.11 -0.5
135,927 + GFF3624 0.11 -2.3
135,927 + GFF3624 0.11 -1.5
135,927 + GFF3624 0.11 -2.2
135,928 - GFF3624 0.11 -1.7
135,928 - GFF3624 0.11 +1.2
135,928 - GFF3624 0.11 -0.5
135,928 - GFF3624 0.11 -0.7
135,951 + GFF3624 0.13 +1.8
135,951 + GFF3624 0.13 -1.0
135,951 + GFF3624 0.13 -1.5
135,951 + GFF3624 0.13 +2.8
135,951 + GFF3624 0.13 -0.2
135,951 + GFF3624 0.13 -0.5
135,951 + GFF3624 0.13 -0.3
135,951 + GFF3624 0.13 +0.4
135,951 + GFF3624 0.13 -1.7
135,951 + GFF3624 0.13 -1.2
135,951 + GFF3624 0.13 -1.3
135,952 - GFF3624 0.14 +0.8
135,952 - GFF3624 0.14 +1.2
135,952 - GFF3624 0.14 -2.2
135,952 - GFF3624 0.14 -0.8
135,952 - GFF3624 0.14 +1.1
135,952 - GFF3624 0.14 -0.6
135,952 - GFF3624 0.14 -0.3
135,952 - GFF3624 0.14 +0.5
135,952 - GFF3624 0.14 -0.0

Or see this region's nucleotide sequence