Strain Fitness in Variovorax sp. SCN45 around GFF355

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF353 and GFF354 overlap by 4 nucleotidesGFF354 and GFF355 are separated by 137 nucleotidesGFF355 and GFF356 are separated by 34 nucleotides GFF353 - FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster, at 385,072 to 385,254 GFF353 GFF354 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 385,251 to 386,024 GFF354 GFF355 - Adenylate kinase (EC 2.7.4.3), at 386,162 to 386,818 GFF355 GFF356 - L-asparaginase (EC 3.5.1.1), at 386,853 to 387,815 GFF356 Position (kb) 386 387Strain fitness (log2 ratio) -2 -1 0 1 2at 386.079 kb on + strandat 386.079 kb on + strandat 386.080 kb on - strandat 386.080 kb on - strandat 386.080 kb on - strandat 386.080 kb on - strandat 386.080 kb on - strandat 387.250 kb on + strand, within GFF356at 387.250 kb on + strand, within GFF356at 387.250 kb on + strand, within GFF356at 387.250 kb on + strand, within GFF356at 387.250 kb on + strand, within GFF356at 387.250 kb on + strand, within GFF356at 387.250 kb on + strand, within GFF356at 387.250 kb on + strand, within GFF356at 387.251 kb on - strand, within GFF356at 387.251 kb on - strand, within GFF356at 387.251 kb on - strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.295 kb on + strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.296 kb on - strand, within GFF356at 387.715 kb on + strand, within GFF356at 387.716 kb on - strand, within GFF356at 387.716 kb on - strand, within GFF356

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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386,079 + -0.2
386,079 + -0.4
386,080 - +2.2
386,080 - -0.7
386,080 - +0.8
386,080 - +0.5
386,080 - +0.4
387,250 + GFF356 0.41 +0.3
387,250 + GFF356 0.41 +0.6
387,250 + GFF356 0.41 +0.8
387,250 + GFF356 0.41 -0.3
387,250 + GFF356 0.41 -0.5
387,250 + GFF356 0.41 -1.4
387,250 + GFF356 0.41 -0.3
387,250 + GFF356 0.41 -0.5
387,251 - GFF356 0.41 -0.8
387,251 - GFF356 0.41 -0.1
387,251 - GFF356 0.41 -0.1
387,295 + GFF356 0.46 +0.8
387,295 + GFF356 0.46 -0.4
387,295 + GFF356 0.46 -0.7
387,295 + GFF356 0.46 -0.1
387,295 + GFF356 0.46 +0.7
387,295 + GFF356 0.46 -0.8
387,295 + GFF356 0.46 +0.7
387,295 + GFF356 0.46 +0.0
387,295 + GFF356 0.46 +0.9
387,296 - GFF356 0.46 +0.5
387,296 - GFF356 0.46 -0.5
387,296 - GFF356 0.46 -0.7
387,296 - GFF356 0.46 +0.2
387,296 - GFF356 0.46 +0.3
387,296 - GFF356 0.46 +0.8
387,296 - GFF356 0.46 -0.5
387,296 - GFF356 0.46 -2.3
387,715 + GFF356 0.90 -0.1
387,716 - GFF356 0.90 -0.4
387,716 - GFF356 0.90 -0.4

Or see this region's nucleotide sequence