Strain Fitness in Variovorax sp. SCN45 around GFF3501

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3499 and GFF3500 overlap by 11 nucleotidesGFF3500 and GFF3501 are separated by 232 nucleotidesGFF3501 and GFF3502 are separated by 19 nucleotidesGFF3502 and GFF3503 are separated by 140 nucleotides GFF3499 - Toxin HigB / Protein kinase domain of HipA, at 4,360 to 5,580 GFF3499 GFF3500 - no description, at 5,570 to 5,773 GFF3500 GFF3501 - Putative short-chain dehydrogenase, at 6,006 to 6,770 GFF3501 GFF3502 - hypothetical protein, at 6,790 to 7,047 GFF3502 GFF3503 - Subclass B3 beta-lactamase (EC 3.5.2.6), at 7,188 to 8,198 GFF3503 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 5.060 kb on + strand, within GFF3499at 5.061 kb on - strand, within GFF3499at 5.168 kb on + strand, within GFF3499at 5.168 kb on + strand, within GFF3499at 5.169 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.205 kb on - strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.215 kb on + strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.216 kb on - strand, within GFF3499at 5.369 kb on + strand, within GFF3499at 5.369 kb on + strand, within GFF3499at 5.369 kb on + strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.370 kb on - strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.426 kb on + strand, within GFF3499at 5.427 kb on - strand, within GFF3499at 5.427 kb on - strand, within GFF3499at 5.501 kb on + strandat 5.967 kb on + strandat 5.980 kb on + strandat 5.980 kb on + strandat 5.981 kb on - strandat 5.981 kb on - strandat 5.981 kb on - strandat 6.711 kb on + strandat 6.823 kb on + strand, within GFF3502at 6.823 kb on + strand, within GFF3502at 6.823 kb on + strand, within GFF3502at 6.823 kb on + strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.896 kb on - strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.923 kb on - strand, within GFF3502at 6.923 kb on - strand, within GFF3502at 6.937 kb on + strand, within GFF3502at 6.938 kb on - strand, within GFF3502at 7.105 kb on + strandat 7.105 kb on + strandat 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.552 kb on + strand, within GFF3503at 7.552 kb on + strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.604 kb on - strand, within GFF3503at 7.705 kb on + strand, within GFF3503at 7.706 kb on - strand, within GFF3503at 7.720 kb on + strand, within GFF3503at 7.721 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.769 kb on - strand, within GFF3503

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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5,060 + GFF3499 0.57 -1.3
5,061 - GFF3499 0.57 +0.2
5,168 + GFF3499 0.66 -0.7
5,168 + GFF3499 0.66 -0.5
5,169 - GFF3499 0.66 +0.0
5,205 - GFF3499 0.69 +0.5
5,205 - GFF3499 0.69 -1.1
5,205 - GFF3499 0.69 +0.0
5,205 - GFF3499 0.69 -0.4
5,215 + GFF3499 0.70 -0.6
5,215 + GFF3499 0.70 -0.2
5,215 + GFF3499 0.70 -0.6
5,215 + GFF3499 0.70 +0.3
5,216 - GFF3499 0.70 +0.0
5,216 - GFF3499 0.70 +0.4
5,216 - GFF3499 0.70 +0.8
5,216 - GFF3499 0.70 -0.5
5,216 - GFF3499 0.70 -0.5
5,216 - GFF3499 0.70 +0.9
5,369 + GFF3499 0.83 -0.6
5,369 + GFF3499 0.83 -0.7
5,369 + GFF3499 0.83 -0.1
5,370 - GFF3499 0.83 -0.3
5,370 - GFF3499 0.83 +0.7
5,370 - GFF3499 0.83 +0.0
5,370 - GFF3499 0.83 +0.4
5,370 - GFF3499 0.83 -0.4
5,370 - GFF3499 0.83 -0.4
5,426 + GFF3499 0.87 +0.2
5,426 + GFF3499 0.87 -0.7
5,426 + GFF3499 0.87 -0.1
5,426 + GFF3499 0.87 -0.0
5,426 + GFF3499 0.87 -2.2
5,426 + GFF3499 0.87 +1.2
5,426 + GFF3499 0.87 +0.5
5,427 - GFF3499 0.87 -0.4
5,427 - GFF3499 0.87 -0.7
5,501 + -1.0
5,967 + +0.3
5,980 + -0.2
5,980 + -0.4
5,981 - -0.0
5,981 - +2.3
5,981 - -0.1
6,711 + +1.8
6,823 + GFF3502 0.13 -0.6
6,823 + GFF3502 0.13 +0.2
6,823 + GFF3502 0.13 -0.3
6,823 + GFF3502 0.13 +0.4
6,824 - GFF3502 0.13 +0.6
6,824 - GFF3502 0.13 +1.0
6,824 - GFF3502 0.13 -1.0
6,824 - GFF3502 0.13 +0.2
6,824 - GFF3502 0.13 +0.1
6,824 - GFF3502 0.13 +0.1
6,824 - GFF3502 0.13 +0.2
6,824 - GFF3502 0.13 -0.4
6,896 - GFF3502 0.41 -0.3
6,922 + GFF3502 0.51 +0.1
6,922 + GFF3502 0.51 -1.6
6,922 + GFF3502 0.51 -0.8
6,922 + GFF3502 0.51 -0.7
6,922 + GFF3502 0.51 -0.7
6,923 - GFF3502 0.52 -0.5
6,923 - GFF3502 0.52 +0.5
6,937 + GFF3502 0.57 -0.8
6,938 - GFF3502 0.57 -0.1
7,105 + -0.3
7,105 + +0.2
7,417 + GFF3503 0.23 +1.8
7,417 + GFF3503 0.23 +0.4
7,417 + GFF3503 0.23 -0.5
7,417 + GFF3503 0.23 -0.8
7,417 + GFF3503 0.23 +0.5
7,417 + GFF3503 0.23 +0.8
7,417 + GFF3503 0.23 -0.1
7,417 + GFF3503 0.23 +0.2
7,417 + GFF3503 0.23 +0.7
7,417 + GFF3503 0.23 -1.3
7,418 - GFF3503 0.23 -0.4
7,418 - GFF3503 0.23 -0.8
7,418 - GFF3503 0.23 -0.2
7,418 - GFF3503 0.23 +0.6
7,418 - GFF3503 0.23 +0.8
7,418 - GFF3503 0.23 +0.2
7,418 - GFF3503 0.23 +0.1
7,418 - GFF3503 0.23 -0.4
7,418 - GFF3503 0.23 -0.7
7,418 - GFF3503 0.23 -0.7
7,418 - GFF3503 0.23 +0.6
7,418 - GFF3503 0.23 -0.2
7,552 + GFF3503 0.36 -0.2
7,552 + GFF3503 0.36 -0.1
7,553 - GFF3503 0.36 -1.5
7,553 - GFF3503 0.36 +0.2
7,553 - GFF3503 0.36 +0.0
7,553 - GFF3503 0.36 +0.1
7,553 - GFF3503 0.36 -0.6
7,604 - GFF3503 0.41 +0.3
7,705 + GFF3503 0.51 +0.3
7,706 - GFF3503 0.51 -0.7
7,720 + GFF3503 0.53 +1.0
7,721 - GFF3503 0.53 +0.6
7,736 - GFF3503 0.54 -0.3
7,736 - GFF3503 0.54 -0.7
7,736 - GFF3503 0.54 +0.5
7,768 + GFF3503 0.57 +0.3
7,768 + GFF3503 0.57 -0.2
7,768 + GFF3503 0.57 +0.8
7,768 + GFF3503 0.57 -1.4
7,769 - GFF3503 0.57 +0.7
7,769 - GFF3503 0.57 -0.7
7,769 - GFF3503 0.57 -0.4

Or see this region's nucleotide sequence