Strain Fitness in Variovorax sp. SCN45 around GFF3474

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3473 and GFF3474 are separated by 73 nucleotidesGFF3474 and GFF3475 overlap by 19 nucleotides GFF3473 - no description, at 292,872 to 293,801 GFF3473 GFF3474 - Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily, at 293,875 to 295,866 GFF3474 GFF3475 - Gate supefamily SpmA/SpmB domains protein, at 295,848 to 297,077 GFF3475 Position (kb) 293 294 295 296Strain fitness (log2 ratio) -2 -1 0 1at 292.952 kb on + strandat 292.953 kb on - strandat 292.978 kb on + strand, within GFF3473at 292.978 kb on + strand, within GFF3473at 292.979 kb on - strand, within GFF3473at 292.979 kb on - strand, within GFF3473at 293.647 kb on + strand, within GFF3473at 293.830 kb on + strandat 293.831 kb on - strandat 294.235 kb on + strand, within GFF3474at 294.235 kb on + strand, within GFF3474at 294.236 kb on - strand, within GFF3474at 294.349 kb on + strand, within GFF3474at 294.349 kb on + strand, within GFF3474at 294.349 kb on + strand, within GFF3474at 294.350 kb on - strand, within GFF3474at 294.350 kb on - strand, within GFF3474at 294.350 kb on - strand, within GFF3474at 294.350 kb on - strand, within GFF3474at 294.350 kb on - strand, within GFF3474at 294.352 kb on + strand, within GFF3474at 294.353 kb on - strand, within GFF3474at 294.353 kb on - strand, within GFF3474at 294.391 kb on + strand, within GFF3474at 294.391 kb on + strand, within GFF3474at 294.392 kb on - strand, within GFF3474at 294.392 kb on - strand, within GFF3474at 294.392 kb on - strand, within GFF3474at 294.553 kb on + strand, within GFF3474at 294.754 kb on + strand, within GFF3474at 294.754 kb on + strand, within GFF3474at 294.755 kb on - strand, within GFF3474at 294.755 kb on - strand, within GFF3474at 294.755 kb on - strand, within GFF3474at 294.755 kb on - strand, within GFF3474at 294.755 kb on - strand, within GFF3474at 294.818 kb on - strand, within GFF3474at 294.818 kb on - strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 295.030 kb on + strand, within GFF3474at 295.030 kb on + strand, within GFF3474at 295.030 kb on + strand, within GFF3474at 295.031 kb on - strand, within GFF3474at 295.105 kb on + strand, within GFF3474at 295.105 kb on + strand, within GFF3474at 295.106 kb on - strand, within GFF3474at 295.139 kb on - strand, within GFF3474at 295.147 kb on + strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.159 kb on + strand, within GFF3474at 295.159 kb on + strand, within GFF3474at 295.159 kb on + strand, within GFF3474at 295.205 kb on - strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.226 kb on - strand, within GFF3474at 295.226 kb on - strand, within GFF3474at 295.226 kb on - strand, within GFF3474at 295.322 kb on - strand, within GFF3474at 295.322 kb on - strand, within GFF3474at 295.385 kb on - strand, within GFF3474at 295.401 kb on + strand, within GFF3474at 295.402 kb on - strand, within GFF3474at 295.417 kb on + strand, within GFF3474at 295.418 kb on - strand, within GFF3474at 295.809 kb on + strandat 295.864 kb on + strandat 295.961 kb on - strandat 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.976 kb on - strand, within GFF3475at 295.976 kb on - strand, within GFF3475at 295.976 kb on - strand, within GFF3475at 296.236 kb on + strand, within GFF3475at 296.237 kb on - strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.458 kb on + strand, within GFF3475at 296.458 kb on + strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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292,952 + +1.4
292,953 - +0.6
292,978 + GFF3473 0.11 -0.3
292,978 + GFF3473 0.11 -0.3
292,979 - GFF3473 0.12 +1.2
292,979 - GFF3473 0.12 -1.3
293,647 + GFF3473 0.83 +1.4
293,830 + +0.6
293,831 - +0.4
294,235 + GFF3474 0.18 +0.7
294,235 + GFF3474 0.18 +1.2
294,236 - GFF3474 0.18 +0.6
294,349 + GFF3474 0.24 -0.4
294,349 + GFF3474 0.24 -0.8
294,349 + GFF3474 0.24 -0.6
294,350 - GFF3474 0.24 -0.4
294,350 - GFF3474 0.24 -0.2
294,350 - GFF3474 0.24 -0.7
294,350 - GFF3474 0.24 +0.3
294,350 - GFF3474 0.24 -2.2
294,352 + GFF3474 0.24 +0.9
294,353 - GFF3474 0.24 -0.2
294,353 - GFF3474 0.24 -1.2
294,391 + GFF3474 0.26 -0.1
294,391 + GFF3474 0.26 -0.4
294,392 - GFF3474 0.26 -0.2
294,392 - GFF3474 0.26 -0.2
294,392 - GFF3474 0.26 +0.4
294,553 + GFF3474 0.34 -1.3
294,754 + GFF3474 0.44 -0.9
294,754 + GFF3474 0.44 -0.4
294,755 - GFF3474 0.44 -0.5
294,755 - GFF3474 0.44 +0.3
294,755 - GFF3474 0.44 +1.3
294,755 - GFF3474 0.44 +0.7
294,755 - GFF3474 0.44 -0.6
294,818 - GFF3474 0.47 +0.1
294,818 - GFF3474 0.47 -0.2
294,985 + GFF3474 0.56 +0.2
294,985 + GFF3474 0.56 +0.1
294,985 + GFF3474 0.56 +0.5
294,985 + GFF3474 0.56 -0.2
294,985 + GFF3474 0.56 -0.2
294,985 + GFF3474 0.56 +0.3
294,985 + GFF3474 0.56 +0.8
294,986 - GFF3474 0.56 -0.4
294,986 - GFF3474 0.56 +0.2
294,986 - GFF3474 0.56 +0.6
294,986 - GFF3474 0.56 -0.5
294,986 - GFF3474 0.56 +0.7
294,986 - GFF3474 0.56 -0.2
295,030 + GFF3474 0.58 +0.1
295,030 + GFF3474 0.58 -0.1
295,030 + GFF3474 0.58 -0.3
295,031 - GFF3474 0.58 -0.3
295,105 + GFF3474 0.62 -1.0
295,105 + GFF3474 0.62 +0.0
295,106 - GFF3474 0.62 -0.2
295,139 - GFF3474 0.63 +1.1
295,147 + GFF3474 0.64 -0.1
295,148 - GFF3474 0.64 -0.5
295,148 - GFF3474 0.64 -2.3
295,148 - GFF3474 0.64 +0.4
295,148 - GFF3474 0.64 -0.5
295,148 - GFF3474 0.64 +0.2
295,159 + GFF3474 0.64 -0.1
295,159 + GFF3474 0.64 -0.7
295,159 + GFF3474 0.64 -0.5
295,205 - GFF3474 0.67 +0.3
295,225 + GFF3474 0.68 +0.0
295,225 + GFF3474 0.68 -0.4
295,225 + GFF3474 0.68 +0.0
295,225 + GFF3474 0.68 +0.1
295,225 + GFF3474 0.68 +0.9
295,226 - GFF3474 0.68 -1.4
295,226 - GFF3474 0.68 -0.7
295,226 - GFF3474 0.68 +1.3
295,322 - GFF3474 0.73 -0.2
295,322 - GFF3474 0.73 -0.8
295,385 - GFF3474 0.76 -0.6
295,401 + GFF3474 0.77 +0.2
295,402 - GFF3474 0.77 -0.3
295,417 + GFF3474 0.77 -0.7
295,418 - GFF3474 0.77 +0.1
295,809 + -0.1
295,864 + -0.1
295,961 - +0.8
295,975 + GFF3475 0.10 -0.3
295,975 + GFF3475 0.10 -0.7
295,975 + GFF3475 0.10 +0.4
295,975 + GFF3475 0.10 -0.4
295,975 + GFF3475 0.10 +0.8
295,976 - GFF3475 0.10 +0.6
295,976 - GFF3475 0.10 +0.8
295,976 - GFF3475 0.10 -0.2
296,236 + GFF3475 0.32 +0.0
296,237 - GFF3475 0.32 -0.7
296,296 + GFF3475 0.36 +0.0
296,296 + GFF3475 0.36 -0.7
296,296 + GFF3475 0.36 +0.1
296,297 - GFF3475 0.37 -0.6
296,297 - GFF3475 0.37 -1.1
296,297 - GFF3475 0.37 -0.9
296,297 - GFF3475 0.37 +0.4
296,297 - GFF3475 0.37 +0.3
296,297 - GFF3475 0.37 -0.2
296,297 - GFF3475 0.37 -0.2
296,458 + GFF3475 0.50 -0.5
296,458 + GFF3475 0.50 -0.8
296,459 - GFF3475 0.50 -1.2
296,459 - GFF3475 0.50 -1.5
296,459 - GFF3475 0.50 -0.6
296,599 + GFF3475 0.61 -0.3
296,599 + GFF3475 0.61 -0.2
296,599 + GFF3475 0.61 -0.2
296,599 + GFF3475 0.61 -0.1
296,599 + GFF3475 0.61 -0.6

Or see this region's nucleotide sequence