Strain Fitness in Variovorax sp. SCN45 around GFF3453

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
274,811	+		GFF3452	0.53	-0.6
274,812	-		GFF3452	0.53	-0.8
274,854	-		GFF3452	0.55	-0.1
275,015	-		GFF3452	0.65	-0.1
275,904	-				-0.1
275,949	+				+0.1
276,378	+		GFF3454	0.44	+0.2
276,378	+		GFF3454	0.44	-0.1
276,379	-		GFF3454	0.45	+0.3
276,588	+		GFF3454	0.68	-0.6
276,588	+		GFF3454	0.68	+0.3
276,588	+		GFF3454	0.68	-2.1
276,588	+		GFF3454	0.68	-2.2
276,588	+		GFF3454	0.68	+0.4
276,589	-		GFF3454	0.68	-1.2
276,589	-		GFF3454	0.68	+0.8
276,713	-		GFF3454	0.82	-0.3