Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3406 and GFF3407 are separated by 10 nucleotides GFF3407 and GFF3408 are separated by 72 nucleotides GFF3408 and GFF3409 are separated by 184 nucleotides
GFF3406 - Benzoyl-CoA oxygenase component A, at 230,076 to 231,362
GFF3406
GFF3407 - MaoC domain protein, at 231,373 to 231,816
GFF3407
GFF3408 - hypothetical protein, at 231,889 to 232,320
GFF3408
GFF3409 - Probable lipoprotein signal peptide, at 232,505 to 233,539
GFF3409
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.153 kb on + strand, within GFF3406 at 231.225 kb on + strand, within GFF3406 at 231.225 kb on + strand, within GFF3406 at 231.225 kb on + strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.226 kb on - strand, within GFF3406 at 231.357 kb on + strand at 231.357 kb on + strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.358 kb on - strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.360 kb on + strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.361 kb on - strand at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.421 kb on + strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.422 kb on - strand, within GFF3407 at 231.464 kb on - strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.891 kb on - strand at 232.339 kb on + strand at 232.339 kb on + strand at 232.339 kb on + strand at 232.340 kb on - strand at 232.448 kb on + strand at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 231,153 + GFF3406 0.84 -1.0 231,225 + GFF3406 0.89 -1.0 231,225 + GFF3406 0.89 -1.0 231,225 + GFF3406 0.89 -1.3 231,226 - GFF3406 0.89 -1.4 231,226 - GFF3406 0.89 -1.3 231,226 - GFF3406 0.89 -2.2 231,226 - GFF3406 0.89 -2.2 231,226 - GFF3406 0.89 -0.4 231,226 - GFF3406 0.89 -2.1 231,357 + -0.3 231,357 + +0.3 231,358 - -1.0 231,358 - -0.2 231,358 - -0.9 231,358 - -0.9 231,358 - -0.8 231,360 + -1.4 231,360 + +0.2 231,360 + -0.1 231,360 + +0.1 231,360 + +1.3 231,360 + -0.2 231,361 - +1.0 231,361 - +0.3 231,361 - -0.7 231,361 - +0.1 231,361 - -0.9 231,361 - -0.5 231,361 - +0.6 231,361 - -0.7 231,421 + GFF3407 0.11 -0.8 231,421 + GFF3407 0.11 -0.1 231,421 + GFF3407 0.11 +0.8 231,421 + GFF3407 0.11 -0.8 231,421 + GFF3407 0.11 +1.0 231,421 + GFF3407 0.11 +0.1 231,421 + GFF3407 0.11 -0.4 231,421 + GFF3407 0.11 +0.1 231,422 - GFF3407 0.11 -1.0 231,422 - GFF3407 0.11 +0.2 231,422 - GFF3407 0.11 -0.2 231,422 - GFF3407 0.11 -0.8 231,422 - GFF3407 0.11 +0.1 231,422 - GFF3407 0.11 +0.4 231,464 - GFF3407 0.20 +0.5 231,543 + GFF3407 0.38 +0.9 231,543 + GFF3407 0.38 +0.1 231,543 + GFF3407 0.38 +0.7 231,543 + GFF3407 0.38 -0.9 231,543 + GFF3407 0.38 -0.0 231,543 + GFF3407 0.38 -0.4 231,543 + GFF3407 0.38 +0.4 231,543 + GFF3407 0.38 -0.5 231,543 + GFF3407 0.38 +0.0 231,543 + GFF3407 0.38 -0.5 231,544 - GFF3407 0.39 -0.5 231,544 - GFF3407 0.39 -2.4 231,544 - GFF3407 0.39 -0.3 231,544 - GFF3407 0.39 -0.5 231,544 - GFF3407 0.39 -0.2 231,544 - GFF3407 0.39 -0.9 231,544 - GFF3407 0.39 -0.5 231,544 - GFF3407 0.39 -0.1 231,891 - -0.4 232,339 + -0.4 232,339 + -0.5 232,339 + +0.6 232,340 - +0.0 232,448 + +0.0 233,079 + GFF3409 0.55 -1.0 233,079 + GFF3409 0.55 +0.2 233,079 + GFF3409 0.55 +1.1 233,079 + GFF3409 0.55 +0.1 233,079 + GFF3409 0.55 -0.4 233,079 + GFF3409 0.55 +0.3 233,079 + GFF3409 0.55 +0.8 233,079 + GFF3409 0.55 -0.0 233,079 + GFF3409 0.55 -2.3 233,080 - GFF3409 0.56 +0.3 233,080 - GFF3409 0.56 -0.2 233,080 - GFF3409 0.56 +0.4 233,080 - GFF3409 0.56 +1.4 233,208 + GFF3409 0.68 -0.3 233,208 + GFF3409 0.68 +0.6 233,208 + GFF3409 0.68 +2.0 233,208 + GFF3409 0.68 -0.3 233,208 + GFF3409 0.68 +1.4 233,208 + GFF3409 0.68 -0.2 233,208 + GFF3409 0.68 +0.4 233,208 + GFF3409 0.68 -0.1 233,208 + GFF3409 0.68 -0.2 233,209 - GFF3409 0.68 -0.2 233,209 - GFF3409 0.68 -0.1 233,209 - GFF3409 0.68 +0.6 233,209 - GFF3409 0.68 -0.7 233,209 - GFF3409 0.68 +0.5 233,209 - GFF3409 0.68 -0.3 233,209 - GFF3409 0.68 +1.3
Or see this region's nucleotide sequence