Strain Fitness in Variovorax sp. SCN45 around GFF3364

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3363 and GFF3364 are separated by 98 nucleotidesGFF3364 and GFF3365 overlap by 23 nucleotidesGFF3365 and GFF3366 are separated by 3 nucleotides GFF3363 - BUG/TctC family periplasmic protein, at 183,020 to 184,000 GFF3363 GFF3364 - Rhodanese-related sulfurtransferase, at 184,099 to 185,724 GFF3364 GFF3365 - Cell division topological specificity factor MinE, at 185,702 to 185,980 GFF3365 GFF3366 - Septum site-determining protein MinD, at 185,984 to 186,799 GFF3366 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 183.107 kb on + strandat 183.263 kb on + strand, within GFF3363at 183.290 kb on + strand, within GFF3363at 183.290 kb on + strand, within GFF3363at 183.356 kb on - strand, within GFF3363at 183.357 kb on - strand, within GFF3363at 183.357 kb on - strand, within GFF3363at 183.357 kb on - strand, within GFF3363at 183.494 kb on + strand, within GFF3363at 183.494 kb on + strand, within GFF3363at 183.494 kb on + strand, within GFF3363at 183.495 kb on - strand, within GFF3363at 183.515 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.702 kb on - strand, within GFF3363at 183.783 kb on - strand, within GFF3363at 183.881 kb on + strand, within GFF3363at 184.005 kb on + strandat 184.006 kb on - strandat 184.190 kb on - strandat 184.253 kb on + strandat 184.253 kb on + strandat 184.254 kb on - strandat 184.254 kb on - strandat 184.254 kb on - strandat 184.294 kb on + strand, within GFF3364at 184.294 kb on + strand, within GFF3364at 184.360 kb on + strand, within GFF3364at 184.360 kb on + strand, within GFF3364at 184.361 kb on - strand, within GFF3364at 184.361 kb on - strand, within GFF3364at 184.477 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.943 kb on - strand, within GFF3364at 184.943 kb on - strand, within GFF3364at 184.943 kb on - strand, within GFF3364at 185.003 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.146 kb on + strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.147 kb on - strand, within GFF3364at 185.253 kb on + strand, within GFF3364at 185.299 kb on + strand, within GFF3364at 185.329 kb on + strand, within GFF3364at 185.329 kb on + strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.330 kb on - strand, within GFF3364at 185.472 kb on - strand, within GFF3364at 185.472 kb on - strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.536 kb on + strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.537 kb on - strand, within GFF3364at 185.630 kb on - strandat 186.084 kb on + strand, within GFF3366at 186.084 kb on + strand, within GFF3366at 186.084 kb on + strand, within GFF3366at 186.085 kb on - strand, within GFF3366at 186.252 kb on + strand, within GFF3366at 186.252 kb on + strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.628 kb on - strand, within GFF3366

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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183,107 + +0.3
183,263 + GFF3363 0.25 -1.3
183,290 + GFF3363 0.28 -0.2
183,290 + GFF3363 0.28 -0.7
183,356 - GFF3363 0.34 +0.3
183,357 - GFF3363 0.34 -0.2
183,357 - GFF3363 0.34 +0.1
183,357 - GFF3363 0.34 +0.5
183,494 + GFF3363 0.48 -1.4
183,494 + GFF3363 0.48 -0.5
183,494 + GFF3363 0.48 -0.4
183,495 - GFF3363 0.48 -0.4
183,515 + GFF3363 0.50 -0.4
183,701 + GFF3363 0.69 +1.4
183,701 + GFF3363 0.69 -0.2
183,701 + GFF3363 0.69 -0.3
183,701 + GFF3363 0.69 +1.6
183,702 - GFF3363 0.70 -0.5
183,783 - GFF3363 0.78 -0.9
183,881 + GFF3363 0.88 -0.6
184,005 + +0.3
184,006 - +0.3
184,190 - -1.0
184,253 + +1.0
184,253 + +0.0
184,254 - -0.6
184,254 - +2.4
184,254 - -0.5
184,294 + GFF3364 0.12 -0.7
184,294 + GFF3364 0.12 +0.1
184,360 + GFF3364 0.16 +1.0
184,360 + GFF3364 0.16 -0.0
184,361 - GFF3364 0.16 +1.8
184,361 - GFF3364 0.16 -0.4
184,477 + GFF3364 0.23 -0.4
184,942 + GFF3364 0.52 +1.0
184,942 + GFF3364 0.52 -0.7
184,942 + GFF3364 0.52 +0.0
184,942 + GFF3364 0.52 +0.2
184,942 + GFF3364 0.52 -0.2
184,943 - GFF3364 0.52 +0.4
184,943 - GFF3364 0.52 +0.4
184,943 - GFF3364 0.52 +0.0
185,003 + GFF3364 0.56 -0.2
185,146 + GFF3364 0.64 -0.4
185,146 + GFF3364 0.64 +0.7
185,146 + GFF3364 0.64 +0.4
185,146 + GFF3364 0.64 -0.2
185,146 + GFF3364 0.64 -0.2
185,146 + GFF3364 0.64 -0.1
185,146 + GFF3364 0.64 +0.1
185,146 + GFF3364 0.64 -0.7
185,147 - GFF3364 0.64 +0.7
185,147 - GFF3364 0.64 -0.3
185,147 - GFF3364 0.64 +0.3
185,147 - GFF3364 0.64 +1.5
185,147 - GFF3364 0.64 +0.0
185,253 + GFF3364 0.71 +1.3
185,299 + GFF3364 0.74 -0.6
185,329 + GFF3364 0.76 +0.4
185,329 + GFF3364 0.76 +1.4
185,330 - GFF3364 0.76 -0.4
185,330 - GFF3364 0.76 +1.0
185,330 - GFF3364 0.76 -0.5
185,330 - GFF3364 0.76 +1.8
185,330 - GFF3364 0.76 +0.3
185,330 - GFF3364 0.76 -0.2
185,330 - GFF3364 0.76 +1.7
185,472 - GFF3364 0.84 +1.5
185,472 - GFF3364 0.84 -0.6
185,536 + GFF3364 0.88 -1.0
185,536 + GFF3364 0.88 -0.3
185,536 + GFF3364 0.88 -0.1
185,536 + GFF3364 0.88 -0.8
185,536 + GFF3364 0.88 -0.2
185,536 + GFF3364 0.88 -0.5
185,537 - GFF3364 0.88 +0.3
185,537 - GFF3364 0.88 +1.4
185,537 - GFF3364 0.88 +0.4
185,537 - GFF3364 0.88 -2.0
185,630 - +0.0
186,084 + GFF3366 0.12 -1.5
186,084 + GFF3366 0.12 -0.1
186,084 + GFF3366 0.12 +0.4
186,085 - GFF3366 0.12 -0.2
186,252 + GFF3366 0.33 -0.6
186,252 + GFF3366 0.33 +1.5
186,253 - GFF3366 0.33 -0.0
186,253 - GFF3366 0.33 -0.9
186,253 - GFF3366 0.33 +0.1
186,253 - GFF3366 0.33 +1.8
186,253 - GFF3366 0.33 -0.2
186,453 + GFF3366 0.57 +0.8
186,453 + GFF3366 0.57 +0.3
186,453 + GFF3366 0.57 -1.5
186,453 + GFF3366 0.57 -0.0
186,454 - GFF3366 0.58 +0.2
186,454 - GFF3366 0.58 -0.7
186,454 - GFF3366 0.58 -0.5
186,454 - GFF3366 0.58 +0.1
186,454 - GFF3366 0.58 -1.0
186,627 + GFF3366 0.79 -0.1
186,627 + GFF3366 0.79 +0.3
186,627 + GFF3366 0.79 +0.2
186,627 + GFF3366 0.79 +0.7
186,628 - GFF3366 0.79 +0.5
186,628 - GFF3366 0.79 -0.2
186,628 - GFF3366 0.79 -0.2

Or see this region's nucleotide sequence