Strain Fitness in Variovorax sp. SCN45 around GFF3341

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
164,373	+		GFF3340	0.15	+0.2
164,373	+		GFF3340	0.15	+1.4
164,373	+		GFF3340	0.15	+1.6
164,373	+		GFF3340	0.15	+0.4
164,373	+		GFF3340	0.15	-0.7
164,373	+		GFF3340	0.15	-0.7
164,374	-		GFF3340	0.15	-0.2
164,374	-		GFF3340	0.15	+0.4
164,374	-		GFF3340	0.15	+0.5
164,374	-		GFF3340	0.15	-0.3
164,682	+		GFF3340	0.71	-0.5
164,683	-		GFF3340	0.72	-0.3
165,803	+				+0.4
165,803	+				+1.3
165,803	+				-0.4
165,803	+				+0.3
165,803	+				-0.5
165,803	+				+0.4
165,803	+				+1.1
165,803	+				+1.8
165,804	-				-1.0
165,804	-				-0.0
165,804	-				+0.5
165,804	-				+0.2
165,804	-				-0.6
165,804	-				+0.3
165,804	-				-0.3
165,804	-				-0.7
165,804	-				+0.7
165,804	-				-0.3
165,804	-				+0.6
165,973	+				+0.8
166,139	+		GFF3342	0.24	-0.3
166,139	+		GFF3342	0.24	-0.4
166,160	+		GFF3342	0.26	-0.5
166,341	-		GFF3342	0.46	-2.0
166,608	-		GFF3342	0.75	+0.8
166,608	-		GFF3342	0.75	+0.7
166,772	+				-1.6
166,772	+				+0.1
166,772	+				+0.4
166,772	+				-0.6
166,772	+				-0.2
166,772	+				+1.1
166,772	+				+0.5
166,772	+				+0.5
166,772	+				+2.4
166,773	-				+0.1
166,773	-				-0.3
166,773	-				-0.7
166,773	-				-0.2
166,773	-				-0.3
166,773	-				+0.5
166,773	-				+1.1
166,773	-				-0.2
166,773	-				-0.6
166,773	-				-1.1
166,773	-				-0.4
166,773	-				+0.6