Strain Fitness in Variovorax sp. SCN45 around GFF3336

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3334 and GFF3335 are separated by 16 nucleotidesGFF3335 and GFF3336 are separated by 0 nucleotidesGFF3336 and GFF3337 are separated by 38 nucleotidesGFF3337 and GFF3338 are separated by 139 nucleotides GFF3334 - hypothetical protein, at 158,935 to 159,822 GFF3334 GFF3335 - no description, at 159,839 to 159,997 GFF3335 GFF3336 - tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG, at 159,998 to 161,947 GFF3336 GFF3337 - 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170), at 161,986 to 162,585 GFF3337 GFF3338 - Threonine efflux protein, at 162,725 to 163,339 GFF3338 Position (kb) 159 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.260 kb on - strand, within GFF3334at 159.370 kb on + strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.901 kb on + strand, within GFF3335at 159.901 kb on + strand, within GFF3335at 159.902 kb on - strand, within GFF3335at 159.941 kb on + strand, within GFF3335at 159.942 kb on - strand, within GFF3335at 161.054 kb on + strand, within GFF3336at 161.241 kb on - strand, within GFF3336at 161.291 kb on + strand, within GFF3336at 161.700 kb on + strand, within GFF3336at 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.961 kb on + strandat 161.961 kb on + strandat 161.961 kb on + strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 162.031 kb on + strandat 162.031 kb on + strandat 162.031 kb on + strandat 162.032 kb on - strandat 162.032 kb on - strandat 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.359 kb on + strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.611 kb on - strandat 162.668 kb on + strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.743 kb on + strandat 162.743 kb on + strandat 162.744 kb on - strandat 162.744 kb on - strandat 162.930 kb on - strand, within GFF3338

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
159,151 + GFF3334 0.24 +0.1
159,151 + GFF3334 0.24 -0.1
159,151 + GFF3334 0.24 -0.3
159,151 + GFF3334 0.24 +0.3
159,151 + GFF3334 0.24 +0.4
159,151 + GFF3334 0.24 -0.3
159,151 + GFF3334 0.24 +0.3
159,152 - GFF3334 0.24 -0.2
159,152 - GFF3334 0.24 -0.7
159,152 - GFF3334 0.24 +1.6
159,152 - GFF3334 0.24 -0.2
159,152 - GFF3334 0.24 +0.3
159,152 - GFF3334 0.24 +0.5
159,152 - GFF3334 0.24 -0.4
159,241 + GFF3334 0.34 -0.6
159,241 + GFF3334 0.34 -0.5
159,241 + GFF3334 0.34 +0.1
159,241 + GFF3334 0.34 +0.1
159,241 + GFF3334 0.34 +0.3
159,241 + GFF3334 0.34 +0.1
159,241 + GFF3334 0.34 +1.6
159,241 + GFF3334 0.34 +0.0
159,241 + GFF3334 0.34 -1.6
159,242 - GFF3334 0.35 -0.3
159,242 - GFF3334 0.35 -0.4
159,242 - GFF3334 0.35 -1.5
159,242 - GFF3334 0.35 -1.0
159,242 - GFF3334 0.35 -0.2
159,242 - GFF3334 0.35 +0.9
159,242 - GFF3334 0.35 -0.3
159,242 - GFF3334 0.35 -0.9
159,242 - GFF3334 0.35 +0.3
159,242 - GFF3334 0.35 -0.5
159,242 - GFF3334 0.35 -1.0
159,242 - GFF3334 0.35 +0.3
159,242 - GFF3334 0.35 +0.0
159,242 - GFF3334 0.35 -0.8
159,242 - GFF3334 0.35 -0.2
159,242 - GFF3334 0.35 -0.6
159,242 - GFF3334 0.35 +0.5
159,260 - GFF3334 0.37 +0.7
159,370 + GFF3334 0.49 +0.5
159,371 - GFF3334 0.49 +0.1
159,371 - GFF3334 0.49 -0.8
159,371 - GFF3334 0.49 -0.1
159,508 + GFF3334 0.65 -0.2
159,508 + GFF3334 0.65 +0.2
159,508 + GFF3334 0.65 +0.3
159,508 + GFF3334 0.65 +0.2
159,508 + GFF3334 0.65 +0.8
159,508 + GFF3334 0.65 -0.2
159,508 + GFF3334 0.65 -1.2
159,508 + GFF3334 0.65 -0.5
159,508 + GFF3334 0.65 +0.0
159,508 + GFF3334 0.65 +1.4
159,508 + GFF3334 0.65 +0.8
159,508 + GFF3334 0.65 -1.0
159,508 + GFF3334 0.65 -0.0
159,508 + GFF3334 0.65 -0.1
159,509 - GFF3334 0.65 -0.6
159,509 - GFF3334 0.65 -0.1
159,509 - GFF3334 0.65 +0.8
159,509 - GFF3334 0.65 -0.6
159,509 - GFF3334 0.65 -0.2
159,509 - GFF3334 0.65 +3.1
159,509 - GFF3334 0.65 -0.0
159,509 - GFF3334 0.65 -0.5
159,509 - GFF3334 0.65 +0.3
159,509 - GFF3334 0.65 +0.5
159,509 - GFF3334 0.65 -0.6
159,509 - GFF3334 0.65 -0.2
159,509 - GFF3334 0.65 -0.2
159,901 + GFF3335 0.39 -0.7
159,901 + GFF3335 0.39 -0.1
159,902 - GFF3335 0.40 +1.3
159,941 + GFF3335 0.64 -0.0
159,942 - GFF3335 0.65 +0.6
161,054 + GFF3336 0.54 -0.2
161,241 - GFF3336 0.64 +0.3
161,291 + GFF3336 0.66 -0.5
161,700 + GFF3336 0.87 +0.3
161,955 + -0.2
161,955 + +0.2
161,955 + -0.5
161,955 + +0.8
161,955 + -0.5
161,955 + +1.6
161,955 + -0.7
161,955 + -0.8
161,955 + +0.7
161,955 + +0.0
161,955 + -0.3
161,956 - +0.4
161,956 - +2.4
161,956 - +0.6
161,956 - +0.4
161,961 + +1.4
161,961 + +0.2
161,961 + -0.0
161,962 - -0.6
161,962 - +0.2
161,962 - +0.8
161,962 - -0.5
161,962 - +0.4
162,031 + +0.5
162,031 + +0.8
162,031 + -1.2
162,032 - +0.8
162,032 - -0.7
162,064 + GFF3337 0.13 -0.5
162,064 + GFF3337 0.13 +0.3
162,064 + GFF3337 0.13 +0.7
162,064 + GFF3337 0.13 -0.2
162,064 + GFF3337 0.13 -1.3
162,065 - GFF3337 0.13 -0.7
162,065 - GFF3337 0.13 -0.5
162,065 - GFF3337 0.13 -0.0
162,065 - GFF3337 0.13 +0.1
162,065 - GFF3337 0.13 +0.4
162,065 - GFF3337 0.13 -0.9
162,065 - GFF3337 0.13 +0.8
162,358 + GFF3337 0.62 -0.5
162,358 + GFF3337 0.62 +0.4
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 -2.9
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 +1.1
162,358 + GFF3337 0.62 +0.8
162,358 + GFF3337 0.62 -0.5
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 +0.8
162,358 + GFF3337 0.62 -1.5
162,358 + GFF3337 0.62 +0.1
162,358 + GFF3337 0.62 +1.7
162,358 + GFF3337 0.62 -0.8
162,358 + GFF3337 0.62 +1.4
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 -0.4
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -0.6
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 +2.4
162,358 + GFF3337 0.62 +0.6
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 -0.0
162,358 + GFF3337 0.62 -0.4
162,359 + GFF3337 0.62 +0.8
162,359 - GFF3337 0.62 -1.2
162,359 - GFF3337 0.62 +0.0
162,359 - GFF3337 0.62 -0.6
162,359 - GFF3337 0.62 +0.6
162,359 - GFF3337 0.62 -0.6
162,359 - GFF3337 0.62 -0.9
162,359 - GFF3337 0.62 -0.1
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 -1.5
162,359 - GFF3337 0.62 +1.4
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 -0.9
162,359 - GFF3337 0.62 -0.3
162,359 - GFF3337 0.62 -1.6
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 -0.6
162,359 - GFF3337 0.62 +0.1
162,359 - GFF3337 0.62 -1.0
162,359 - GFF3337 0.62 -1.7
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 +0.4
162,359 - GFF3337 0.62 +0.0
162,359 - GFF3337 0.62 -1.2
162,359 - GFF3337 0.62 -0.6
162,359 - GFF3337 0.62 +0.2
162,359 - GFF3337 0.62 +0.5
162,459 + GFF3337 0.79 +0.4
162,459 + GFF3337 0.79 -0.5
162,459 + GFF3337 0.79 +0.3
162,459 + GFF3337 0.79 +0.8
162,460 - GFF3337 0.79 -0.5
162,460 - GFF3337 0.79 +0.2
162,460 - GFF3337 0.79 -0.7
162,611 - +0.3
162,668 + -0.6
162,669 - +1.5
162,669 - -0.0
162,669 - +0.4
162,743 + +0.6
162,743 + +1.8
162,744 - -0.5
162,744 - -0.6
162,930 - GFF3338 0.33 +0.6

Or see this region's nucleotide sequence