Strain Fitness in Variovorax sp. SCN45 around GFF3286

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
112,646	+		GFF3285	0.60	-0.9
112,747	+		GFF3285	0.65	-1.1
112,747	+		GFF3285	0.65	-0.5
112,748	-		GFF3285	0.65	-0.1
112,748	-		GFF3285	0.65	-1.3
112,748	-		GFF3285	0.65	-0.5
112,748	-		GFF3285	0.65	+0.0
112,855	+		GFF3285	0.69	-0.3
112,855	+		GFF3285	0.69	-0.0
112,855	+		GFF3285	0.69	-0.2
112,856	-		GFF3285	0.70	+0.0
113,419	+				-0.0
113,419	+				-0.6
113,636	+				+1.8
113,636	+				-0.7
113,637	-				-0.3
113,637	-				-0.2
113,637	-				-0.7
113,656	+		GFF3286	0.22	+1.4
113,765	-				+0.3
113,775	+				+0.5
113,810	-				-0.5
113,816	+				-0.4
113,816	+				-1.5
113,816	+				+0.1
113,816	+				-0.9
113,817	-				-0.5
113,817	-				-0.5
113,817	-				-0.1
113,817	-				-1.3
113,817	-				+1.2
113,817	-				-0.0
113,817	-				+1.4
113,817	-				-0.0
113,818	+				-0.6
113,818	+				-1.2
113,818	+				-0.3
113,818	+				-0.7
113,818	+				-0.9
113,818	+				-0.3
113,818	+				-1.2
113,818	+				+0.1
113,818	+				-0.1
113,818	+				+0.6
113,818	+				-0.0
113,818	+				+0.5
113,819	-				-1.2
113,819	-				+0.7
113,819	-				+0.5
113,819	-				-0.1
113,819	-				-0.4
113,819	-				+0.8
113,819	-				+0.5
113,819	-				+1.0
113,819	-				+0.1
113,819	-				+0.5
113,819	-				-0.3
113,819	-				-0.3
113,819	-				+0.4
113,819	-				+1.8
113,819	-				+0.3
113,819	-				+1.1
113,819	-				-0.5
113,822	+				-0.9
113,822	+				+1.6
113,822	+				-0.4
113,822	+				-0.2
113,823	-				+0.5
113,823	-				-0.1
113,823	-				+0.1
113,823	-				-1.2
113,823	-				-1.5
113,823	-				-0.7
113,823	-				-0.2
113,837	+				+0.1
113,837	+				-0.0
113,838	-				-0.8
113,838	-				-0.4
114,020	+		GFF3287	0.25	+0.3
114,020	+		GFF3287	0.25	-0.4
114,020	+		GFF3287	0.25	-0.5
114,020	+		GFF3287	0.25	+2.4
114,020	+		GFF3287	0.25	-0.2
114,020	+		GFF3287	0.25	+0.7
114,020	+		GFF3287	0.25	+0.2
114,020	+		GFF3287	0.25	+0.7
114,020	+		GFF3287	0.25	-0.5
114,020	+		GFF3287	0.25	-0.3
114,020	+		GFF3287	0.25	-0.8
114,020	+		GFF3287	0.25	+0.8
114,020	+		GFF3287	0.25	+0.1
114,020	+		GFF3287	0.25	-0.5
114,020	+		GFF3287	0.25	-0.5
114,021	-		GFF3287	0.25	-0.0
114,021	-		GFF3287	0.25	+0.4
114,021	-		GFF3287	0.25	-2.0
114,021	-		GFF3287	0.25	-0.2
114,021	-		GFF3287	0.25	+0.1
114,021	-		GFF3287	0.25	+0.4
114,021	-		GFF3287	0.25	+0.3
114,021	-		GFF3287	0.25	-0.0
114,021	-		GFF3287	0.25	-1.0
114,021	-		GFF3287	0.25	+1.0
114,021	-		GFF3287	0.25	+0.0
114,021	-		GFF3287	0.25	+0.1
114,021	-		GFF3287	0.25	-0.4
114,021	-		GFF3287	0.25	+0.1
114,021	-		GFF3287	0.25	-0.1
114,021	-		GFF3287	0.25	+1.7
114,021	-		GFF3287	0.25	+0.4
114,021	-		GFF3287	0.25	-0.5
114,021	-		GFF3287	0.25	+0.7
114,021	-		GFF3287	0.25	-0.6
114,173	+		GFF3287	0.54	-1.7
114,173	+		GFF3287	0.54	-1.2
114,173	+		GFF3287	0.54	-0.1
114,173	+		GFF3287	0.54	-0.7
114,173	+		GFF3287	0.54	+0.5
114,173	+		GFF3287	0.54	+0.4
114,174	-		GFF3287	0.54	-0.7
114,174	-		GFF3287	0.54	-1.0
114,174	-		GFF3287	0.54	+0.1
114,215	+		GFF3287	0.62	+0.3
114,215	+		GFF3287	0.62	-0.1
114,215	+		GFF3287	0.62	-0.2
114,215	+		GFF3287	0.62	+1.3
114,215	+		GFF3287	0.62	-0.6
114,215	+		GFF3287	0.62	+0.3
114,215	+		GFF3287	0.62	-0.2
114,215	+		GFF3287	0.62	-1.1
114,215	+		GFF3287	0.62	-1.3
114,215	+		GFF3287	0.62	+0.5
114,215	+		GFF3287	0.62	-0.9
114,216	-		GFF3287	0.62	+0.4
114,216	-		GFF3287	0.62	-0.9
114,216	-		GFF3287	0.62	-0.5
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	+0.0
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	-0.0
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	-0.5
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	+0.5
114,216	-		GFF3287	0.62	+1.8
114,216	-		GFF3287	0.62	+0.2
114,216	-		GFF3287	0.62	-0.3
114,216	-		GFF3287	0.62	+1.3
114,245	+		GFF3287	0.68	-1.9
114,245	+		GFF3287	0.68	-1.5
114,245	+		GFF3287	0.68	+0.4
114,245	+		GFF3287	0.68	-0.2
114,245	+		GFF3287	0.68	-0.2
114,246	-		GFF3287	0.68	-0.4
114,246	-		GFF3287	0.68	-0.0
114,246	-		GFF3287	0.68	-0.5
114,246	-		GFF3287	0.68	+1.2
114,460	+				+0.7
114,460	+				-0.0
114,460	+				-0.6
114,461	-				-0.9
114,461	-				-0.2
114,639	+		GFF3288	0.23	+0.0
114,639	+		GFF3288	0.23	-0.0
114,639	+		GFF3288	0.23	-0.3
114,639	+		GFF3288	0.23	+0.4
114,639	+		GFF3288	0.23	-0.1
114,639	+		GFF3288	0.23	+1.4
114,639	+		GFF3288	0.23	-0.3
114,639	+		GFF3288	0.23	+0.2
114,639	+		GFF3288	0.23	+0.2
114,639	+		GFF3288	0.23	+0.8
114,640	-		GFF3288	0.23	+0.1
114,640	-		GFF3288	0.23	+0.3
114,640	-		GFF3288	0.23	-0.7
114,640	-		GFF3288	0.23	+0.3
114,640	-		GFF3288	0.23	-0.1
114,640	-		GFF3288	0.23	-0.2
114,640	-		GFF3288	0.23	-0.2
114,640	-		GFF3288	0.23	-0.4
114,640	-		GFF3288	0.23	-0.4
114,640	-		GFF3288	0.23	+0.0
114,640	-		GFF3288	0.23	-0.3
114,640	-		GFF3288	0.23	+1.4
114,640	-		GFF3288	0.23	-2.2
114,640	-		GFF3288	0.23	+1.0
114,640	-		GFF3288	0.23	+0.4
114,640	-		GFF3288	0.23	-0.2
114,660	+		GFF3288	0.27	-1.3
114,660	+		GFF3288	0.27	+1.6
114,660	+		GFF3288	0.27	+0.8
114,660	+		GFF3288	0.27	-0.3
114,660	+		GFF3288	0.27	-0.4
114,660	+		GFF3288	0.27	+0.1
114,660	+		GFF3288	0.27	+0.4
114,660	+		GFF3288	0.27	-0.4
114,660	+		GFF3288	0.27	-1.1
114,660	+		GFF3288	0.27	-0.3
114,660	+		GFF3288	0.27	-0.0
114,660	+		GFF3288	0.27	-0.2
114,661	-		GFF3288	0.27	-0.2
114,661	-		GFF3288	0.27	+0.2
114,661	-		GFF3288	0.27	-0.5
114,661	-		GFF3288	0.27	+0.3
114,661	-		GFF3288	0.27	-0.3
114,661	-		GFF3288	0.27	+0.0
114,661	-		GFF3288	0.27	-0.2
114,661	-		GFF3288	0.27	-0.1
114,661	-		GFF3288	0.27	+0.6
114,661	-		GFF3288	0.27	-0.3
114,661	-		GFF3288	0.27	+0.5
114,661	-		GFF3288	0.27	+0.7