Strain Fitness in Variovorax sp. SCN45 around GFF3233

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3231 and GFF3232 overlap by 4 nucleotidesGFF3232 and GFF3233 are separated by 116 nucleotidesGFF3233 and GFF3234 are separated by 1 nucleotidesGFF3234 and GFF3235 are separated by 55 nucleotidesGFF3235 and GFF3236 overlap by 1 nucleotidesGFF3236 and GFF3237 overlap by 4 nucleotides GFF3231 - hypothetical protein, at 50,575 to 51,186 GFF3231 GFF3232 - Phage lysozyme R (EC 3.2.1.17), at 51,183 to 51,758 GFF3232 GFF3233 - hypothetical protein, at 51,875 to 52,627 GFF3233 GFF3234 - no description, at 52,629 to 52,748 GFF3234 GFF3235 - no description, at 52,804 to 53,175 GFF3235 GFF3236 - no description, at 53,175 to 53,573 GFF3236 GFF3237 - no description, at 53,570 to 53,809 GFF3237 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.949 kb on + strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 51.011 kb on + strand, within GFF3231at 51.011 kb on + strand, within GFF3231at 51.289 kb on + strand, within GFF3232at 51.289 kb on + strand, within GFF3232at 51.290 kb on - strand, within GFF3232at 51.325 kb on + strand, within GFF3232at 51.326 kb on - strand, within GFF3232at 51.409 kb on + strand, within GFF3232at 51.409 kb on + strand, within GFF3232at 51.409 kb on + strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.425 kb on - strand, within GFF3232at 51.433 kb on + strand, within GFF3232at 51.433 kb on + strand, within GFF3232at 51.483 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.485 kb on - strand, within GFF3232at 52.789 kb on - strandat 52.821 kb on - strandat 52.949 kb on - strand, within GFF3235at 53.115 kb on + strand, within GFF3235at 53.115 kb on + strand, within GFF3235at 53.115 kb on + strand, within GFF3235at 53.115 kb on + strand, within GFF3235at 53.115 kb on + strand, within GFF3235at 53.115 kb on + strand, within GFF3235at 53.116 kb on - strand, within GFF3235at 53.116 kb on - strand, within GFF3235at 53.116 kb on - strand, within GFF3235at 53.116 kb on - strand, within GFF3235at 53.116 kb on - strand, within GFF3235at 53.116 kb on - strand, within GFF3235at 53.116 kb on - strand, within GFF3235at 53.203 kb on + strandat 53.203 kb on + strandat 53.204 kb on - strandat 53.204 kb on - strandat 53.514 kb on + strand, within GFF3236at 53.591 kb on + strandat 53.591 kb on + strandat 53.591 kb on + strandat 53.591 kb on + strandat 53.591 kb on + strandat 53.592 kb on - strandat 53.592 kb on - strandat 53.592 kb on - strandat 53.592 kb on - strandat 53.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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50,948 + GFF3231 0.61 -0.2
50,948 + GFF3231 0.61 -0.7
50,948 + GFF3231 0.61 -0.1
50,948 + GFF3231 0.61 -0.2
50,949 + GFF3231 0.61 +0.2
50,949 - GFF3231 0.61 +0.8
50,949 - GFF3231 0.61 -1.1
50,949 - GFF3231 0.61 +0.3
51,011 + GFF3231 0.71 -0.2
51,011 + GFF3231 0.71 -0.3
51,289 + GFF3232 0.18 -0.5
51,289 + GFF3232 0.18 -1.0
51,290 - GFF3232 0.19 +0.1
51,325 + GFF3232 0.25 +0.3
51,326 - GFF3232 0.25 -0.2
51,409 + GFF3232 0.39 -1.5
51,409 + GFF3232 0.39 -0.1
51,409 + GFF3232 0.39 +0.0
51,410 - GFF3232 0.39 -0.7
51,410 - GFF3232 0.39 +0.6
51,410 - GFF3232 0.39 -0.8
51,410 - GFF3232 0.39 -0.3
51,424 + GFF3232 0.42 +0.3
51,424 + GFF3232 0.42 +0.3
51,424 + GFF3232 0.42 +0.7
51,424 + GFF3232 0.42 +0.0
51,425 - GFF3232 0.42 -0.4
51,433 + GFF3232 0.43 +1.1
51,433 + GFF3232 0.43 +0.3
51,483 + GFF3232 0.52 -0.6
51,484 + GFF3232 0.52 -1.0
51,484 + GFF3232 0.52 -0.7
51,484 + GFF3232 0.52 +2.2
51,484 + GFF3232 0.52 -1.2
51,485 - GFF3232 0.52 -0.2
52,789 - +0.7
52,821 - -0.5
52,949 - GFF3235 0.39 -0.7
53,115 + GFF3235 0.84 +0.0
53,115 + GFF3235 0.84 +0.0
53,115 + GFF3235 0.84 +0.7
53,115 + GFF3235 0.84 -0.4
53,115 + GFF3235 0.84 -0.1
53,115 + GFF3235 0.84 -0.2
53,116 - GFF3235 0.84 -0.8
53,116 - GFF3235 0.84 +0.1
53,116 - GFF3235 0.84 +0.6
53,116 - GFF3235 0.84 -0.5
53,116 - GFF3235 0.84 -0.5
53,116 - GFF3235 0.84 +0.1
53,116 - GFF3235 0.84 +0.5
53,203 + -0.5
53,203 + -1.6
53,204 - +0.8
53,204 - +0.2
53,514 + GFF3236 0.85 +0.1
53,591 + -0.2
53,591 + -1.0
53,591 + +0.8
53,591 + -0.5
53,591 + +0.8
53,592 - -0.5
53,592 - -0.3
53,592 - -2.1
53,592 - -0.5
53,592 - -0.1

Or see this region's nucleotide sequence