Strain Fitness in Variovorax sp. SCN45 around GFF3161

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
598,137	+				-1.1
598,137	+				-0.4
598,356	+		GFF3160	0.26	+0.7
598,490	+		GFF3160	0.39	-0.5
598,491	-		GFF3160	0.39	+0.2
598,972	-		GFF3160	0.88	+0.1
599,525	-		GFF3161	0.36	+0.5
600,314	+				-0.0
600,315	-				-0.3
600,315	-				+0.2
600,323	+				+0.7
600,323	+				-0.7
600,323	+				-0.7
600,566	+		GFF3162	0.14	+0.8
600,699	-		GFF3162	0.21	-0.6
600,818	+		GFF3162	0.28	+1.9
600,818	+		GFF3162	0.28	-0.4
600,818	+		GFF3162	0.28	+1.1
600,818	+		GFF3162	0.28	+0.2
600,819	-		GFF3162	0.28	-0.3
600,819	-		GFF3162	0.28	+1.1
600,920	+		GFF3162	0.34	-0.1
600,920	+		GFF3162	0.34	-1.0
600,921	-		GFF3162	0.34	-0.4