Strain Fitness in Variovorax sp. SCN45 around GFF3141

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
571,368	-				-0.5
571,383	-				-0.3
571,462	+				-0.6
571,463	-				-1.6
571,478	-				-0.2
571,581	+				-0.4
571,581	+				-1.0
571,653	+				-1.6
571,653	+				-0.5
571,654	-				-0.3
571,701	+				-1.0
571,701	+				-0.4
571,701	+				-0.4
571,701	+				-0.0
571,701	+				+0.1
571,702	-				+0.5
571,702	-				+1.2
571,702	-				-0.4
571,702	-				-0.5
571,702	-				-0.3
571,702	-				-0.6
571,702	-				-2.5
571,702	-				-1.0
571,702	-				-2.2
571,903	+				+0.4
572,086	+		GFF3140	0.88	+0.3
572,086	+		GFF3140	0.88	+0.5
572,087	-		GFF3140	0.88	+0.4
572,087	-		GFF3140	0.88	-0.5
572,150	+				-0.2
572,151	-				-0.1
572,197	+				-0.5
572,197	+				-0.3
572,198	-				-0.5
572,198	-				-0.8
572,212	-				-0.2
572,277	+				+0.1
572,277	+				-0.5
572,278	-				-0.3
573,704	-		GFF3142	0.14	+0.4
573,733	+		GFF3142	0.15	-0.5
573,734	-		GFF3142	0.15	+1.1
573,734	-		GFF3142	0.15	+0.5
574,111	+		GFF3142	0.25	+0.5