Strain Fitness in Variovorax sp. SCN45 around GFF3134

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
563,844	-		GFF3133	0.32	+0.2
563,973	-		GFF3133	0.43	-1.0
564,273	+		GFF3133	0.69	-1.0
564,452	+		GFF3133	0.85	+0.7
565,054	+		GFF3135	0.12	-0.8
565,055	-		GFF3135	0.12	+0.0
565,055	-		GFF3135	0.12	-0.5
565,078	+		GFF3135	0.16	+0.0
565,079	-		GFF3135	0.16	-0.0
565,103	-		GFF3135	0.21	-0.5
565,286	+		GFF3135	0.55	+1.5
565,287	-		GFF3135	0.55	-0.8
565,287	-		GFF3135	0.55	-0.0
565,318	+		GFF3135	0.61	-0.9
565,377	-		GFF3135	0.71	-0.2
565,639	+		GFF3136	0.10	-0.4
565,650	+		GFF3136	0.11	-0.2
565,651	-		GFF3136	0.12	-0.8
565,651	-		GFF3136	0.12	-0.2
565,718	+		GFF3136	0.18	-0.8
565,719	-		GFF3136	0.18	+0.1
565,719	-		GFF3136	0.18	+0.3
565,775	+		GFF3136	0.24	-0.6
565,775	+		GFF3136	0.24	-0.0
565,776	-		GFF3136	0.24	-1.2
565,776	-		GFF3136	0.24	+0.9