Strain Fitness in Variovorax sp. SCN45 around GFF3121

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3120 and GFF3121 are separated by 258 nucleotidesGFF3121 and GFF3122 are separated by 1 nucleotides GFF3120 - no description, at 548,398 to 549,240 GFF3120 GFF3121 - hypothetical protein, at 549,499 to 549,912 GFF3121 GFF3122 - ATP/GTP-binding protein, at 549,914 to 551,791 GFF3122 Position (kb) 549 550Strain fitness (log2 ratio) -2 -1 0 1at 548.569 kb on + strand, within GFF3120at 548.569 kb on + strand, within GFF3120at 548.570 kb on - strand, within GFF3120at 548.570 kb on - strand, within GFF3120at 548.570 kb on - strand, within GFF3120at 548.570 kb on - strand, within GFF3120at 548.573 kb on + strand, within GFF3120at 548.573 kb on + strand, within GFF3120at 548.573 kb on + strand, within GFF3120at 548.651 kb on + strand, within GFF3120at 548.651 kb on + strand, within GFF3120at 548.652 kb on - strand, within GFF3120at 548.652 kb on - strand, within GFF3120at 548.652 kb on - strand, within GFF3120at 548.652 kb on - strand, within GFF3120at 548.652 kb on - strand, within GFF3120at 548.660 kb on - strand, within GFF3120at 548.660 kb on - strand, within GFF3120at 548.678 kb on + strand, within GFF3120at 548.678 kb on + strand, within GFF3120at 548.678 kb on + strand, within GFF3120at 548.678 kb on + strand, within GFF3120at 548.678 kb on + strand, within GFF3120at 548.678 kb on + strand, within GFF3120at 548.679 kb on - strand, within GFF3120at 548.679 kb on - strand, within GFF3120at 548.679 kb on - strand, within GFF3120at 548.679 kb on - strand, within GFF3120at 548.679 kb on - strand, within GFF3120at 548.680 kb on + strand, within GFF3120at 548.680 kb on + strand, within GFF3120at 548.681 kb on - strand, within GFF3120at 548.724 kb on + strand, within GFF3120at 548.725 kb on - strand, within GFF3120at 548.725 kb on - strand, within GFF3120at 548.864 kb on - strand, within GFF3120at 548.897 kb on + strand, within GFF3120at 548.898 kb on - strand, within GFF3120at 548.915 kb on + strand, within GFF3120at 548.916 kb on - strand, within GFF3120at 549.042 kb on - strand, within GFF3120at 549.042 kb on - strand, within GFF3120at 549.078 kb on - strand, within GFF3120at 549.083 kb on + strand, within GFF3120at 549.135 kb on + strand, within GFF3120at 549.135 kb on + strand, within GFF3120at 549.136 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.140 kb on - strand, within GFF3120at 549.164 kb on + strandat 549.164 kb on + strandat 549.165 kb on - strandat 549.165 kb on - strandat 549.165 kb on - strandat 549.165 kb on - strandat 549.193 kb on + strandat 549.194 kb on + strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.195 kb on - strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.198 kb on + strandat 549.199 kb on - strandat 549.199 kb on - strandat 549.199 kb on - strandat 549.199 kb on - strandat 549.258 kb on + strandat 549.320 kb on + strandat 549.320 kb on + strandat 549.321 kb on - strandat 549.321 kb on - strandat 549.321 kb on - strandat 549.321 kb on - strandat 549.382 kb on + strandat 549.383 kb on - strandat 549.438 kb on + strandat 549.438 kb on + strandat 549.439 kb on - strandat 549.439 kb on - strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.444 kb on + strandat 549.445 kb on - strandat 549.445 kb on - strandat 549.445 kb on - strandat 549.540 kb on - strandat 549.623 kb on + strand, within GFF3121at 549.623 kb on + strand, within GFF3121at 549.624 kb on - strand, within GFF3121at 549.758 kb on - strand, within GFF3121at 549.855 kb on - strand, within GFF3121at 549.923 kb on + strandat 549.995 kb on + strandat 549.995 kb on + strandat 550.061 kb on + strandat 550.062 kb on - strandat 550.062 kb on - strandat 550.062 kb on - strandat 550.062 kb on - strandat 550.074 kb on + strandat 550.074 kb on + strandat 550.209 kb on + strand, within GFF3122at 550.210 kb on - strand, within GFF3122at 550.237 kb on + strand, within GFF3122at 550.237 kb on + strand, within GFF3122at 550.238 kb on - strand, within GFF3122at 550.238 kb on - strand, within GFF3122at 550.262 kb on + strand, within GFF3122at 550.262 kb on + strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.263 kb on - strand, within GFF3122at 550.302 kb on - strand, within GFF3122at 550.317 kb on - strand, within GFF3122at 550.317 kb on - strand, within GFF3122at 550.317 kb on - strand, within GFF3122at 550.371 kb on + strand, within GFF3122at 550.371 kb on + strand, within GFF3122at 550.372 kb on - strand, within GFF3122at 550.385 kb on + strand, within GFF3122at 550.385 kb on + strand, within GFF3122at 550.393 kb on + strand, within GFF3122at 550.398 kb on - strand, within GFF3122at 550.398 kb on - strand, within GFF3122at 550.431 kb on - strand, within GFF3122at 550.439 kb on + strand, within GFF3122at 550.440 kb on - strand, within GFF3122at 550.440 kb on - strand, within GFF3122at 550.563 kb on + strand, within GFF3122at 550.796 kb on + strand, within GFF3122at 550.796 kb on + strand, within GFF3122at 550.797 kb on - strand, within GFF3122at 550.797 kb on - strand, within GFF3122at 550.869 kb on - strand, within GFF3122

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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548,569 + GFF3120 0.20 -0.8
548,569 + GFF3120 0.20 -0.0
548,570 - GFF3120 0.20 -0.2
548,570 - GFF3120 0.20 +0.4
548,570 - GFF3120 0.20 -0.1
548,570 - GFF3120 0.20 -0.4
548,573 + GFF3120 0.21 +0.3
548,573 + GFF3120 0.21 +0.8
548,573 + GFF3120 0.21 +0.8
548,651 + GFF3120 0.30 +0.2
548,651 + GFF3120 0.30 -1.1
548,652 - GFF3120 0.30 -1.5
548,652 - GFF3120 0.30 -1.8
548,652 - GFF3120 0.30 +1.0
548,652 - GFF3120 0.30 -0.1
548,652 - GFF3120 0.30 +0.2
548,660 - GFF3120 0.31 -0.4
548,660 - GFF3120 0.31 -1.5
548,678 + GFF3120 0.33 -0.4
548,678 + GFF3120 0.33 -0.0
548,678 + GFF3120 0.33 -0.7
548,678 + GFF3120 0.33 -0.9
548,678 + GFF3120 0.33 -0.6
548,678 + GFF3120 0.33 +0.8
548,679 - GFF3120 0.33 -0.5
548,679 - GFF3120 0.33 -0.7
548,679 - GFF3120 0.33 +0.3
548,679 - GFF3120 0.33 -0.2
548,679 - GFF3120 0.33 -0.4
548,680 + GFF3120 0.33 +0.5
548,680 + GFF3120 0.33 +0.0
548,681 - GFF3120 0.34 -0.5
548,724 + GFF3120 0.39 -0.5
548,725 - GFF3120 0.39 +0.3
548,725 - GFF3120 0.39 -0.2
548,864 - GFF3120 0.55 +0.1
548,897 + GFF3120 0.59 -0.6
548,898 - GFF3120 0.59 -0.5
548,915 + GFF3120 0.61 -0.3
548,916 - GFF3120 0.61 +0.5
549,042 - GFF3120 0.76 -1.0
549,042 - GFF3120 0.76 +0.6
549,078 - GFF3120 0.81 -0.1
549,083 + GFF3120 0.81 -0.3
549,135 + GFF3120 0.87 -0.4
549,135 + GFF3120 0.87 -0.3
549,136 - GFF3120 0.88 -0.3
549,140 - GFF3120 0.88 -0.5
549,140 - GFF3120 0.88 -1.0
549,140 - GFF3120 0.88 +0.1
549,140 - GFF3120 0.88 -0.2
549,140 - GFF3120 0.88 +1.5
549,140 - GFF3120 0.88 -0.4
549,164 + +0.3
549,164 + -0.7
549,165 - -0.4
549,165 - -1.9
549,165 - -0.3
549,165 - +0.1
549,193 + -0.9
549,194 + -0.2
549,195 - +0.2
549,195 - +0.4
549,195 - -0.3
549,195 - -0.9
549,195 - +0.1
549,195 - -0.2
549,198 + -0.4
549,198 + +0.5
549,198 + -0.1
549,198 + -0.1
549,198 + -0.5
549,198 + -0.0
549,198 + +0.6
549,198 + -0.0
549,199 - -0.2
549,199 - +0.6
549,199 - -0.3
549,199 - -0.1
549,258 + +0.8
549,320 + -0.5
549,320 + -0.1
549,321 - -2.5
549,321 - +0.8
549,321 - +0.0
549,321 - +0.8
549,382 + +0.1
549,383 - +0.2
549,438 + +0.2
549,438 + -0.5
549,439 - +0.4
549,439 - +0.2
549,444 + -0.3
549,444 + -0.1
549,444 + +0.4
549,444 + -0.7
549,444 + -0.5
549,445 - -0.6
549,445 - -0.0
549,445 - +0.1
549,540 - -0.0
549,623 + GFF3121 0.30 -0.0
549,623 + GFF3121 0.30 -1.0
549,624 - GFF3121 0.30 -0.5
549,758 - GFF3121 0.63 -0.2
549,855 - GFF3121 0.86 -0.7
549,923 + -0.6
549,995 + -0.0
549,995 + -0.3
550,061 + +0.5
550,062 - -0.8
550,062 - -0.8
550,062 - +0.1
550,062 - -0.5
550,074 + -2.2
550,074 + +0.3
550,209 + GFF3122 0.16 +0.1
550,210 - GFF3122 0.16 -0.3
550,237 + GFF3122 0.17 -0.9
550,237 + GFF3122 0.17 +0.1
550,238 - GFF3122 0.17 -0.2
550,238 - GFF3122 0.17 -2.3
550,262 + GFF3122 0.19 +0.2
550,262 + GFF3122 0.19 -0.9
550,263 - GFF3122 0.19 -0.4
550,263 - GFF3122 0.19 -0.1
550,263 - GFF3122 0.19 +1.5
550,263 - GFF3122 0.19 -0.4
550,302 - GFF3122 0.21 -0.0
550,317 - GFF3122 0.21 -0.0
550,317 - GFF3122 0.21 +0.1
550,317 - GFF3122 0.21 -0.3
550,371 + GFF3122 0.24 -1.4
550,371 + GFF3122 0.24 -0.4
550,372 - GFF3122 0.24 -0.8
550,385 + GFF3122 0.25 -2.3
550,385 + GFF3122 0.25 -1.5
550,393 + GFF3122 0.26 -0.0
550,398 - GFF3122 0.26 +0.5
550,398 - GFF3122 0.26 +0.8
550,431 - GFF3122 0.28 +0.6
550,439 + GFF3122 0.28 +0.3
550,440 - GFF3122 0.28 -0.4
550,440 - GFF3122 0.28 -1.7
550,563 + GFF3122 0.35 +1.1
550,796 + GFF3122 0.47 -0.9
550,796 + GFF3122 0.47 -0.4
550,797 - GFF3122 0.47 -1.7
550,797 - GFF3122 0.47 -1.3
550,869 - GFF3122 0.51 +0.2

Or see this region's nucleotide sequence