Strain Fitness in Variovorax sp. SCN45 around GFF3102

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3100 and GFF3101 are separated by 114 nucleotidesGFF3101 and GFF3102 are separated by 9 nucleotidesGFF3102 and GFF3103 are separated by 44 nucleotidesGFF3103 and GFF3104 are separated by 39 nucleotides GFF3100 - Aspartyl protease, at 529,144 to 529,788 GFF3100 GFF3101 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 529,903 to 530,256 GFF3101 GFF3102 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY (EC 2.3.1.n3), at 530,266 to 530,904 GFF3102 GFF3103 - Cys-tRNA(Pro) deacylase YbaK, at 530,949 to 531,443 GFF3103 GFF3104 - no description, at 531,483 to 532,172 GFF3104 Position (kb) 530 531Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.567 kb on + strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.568 kb on - strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.666 kb on + strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.667 kb on - strand, within GFF3100at 529.940 kb on + strand, within GFF3101at 529.941 kb on - strand, within GFF3101at 529.941 kb on - strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.056 kb on + strand, within GFF3101at 530.057 kb on - strand, within GFF3101at 530.057 kb on - strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.186 kb on + strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.187 kb on - strand, within GFF3101at 530.950 kb on + strandat 530.951 kb on - strandat 530.951 kb on - strandat 531.026 kb on - strand, within GFF3103at 531.026 kb on - strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.085 kb on + strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.086 kb on - strand, within GFF3103at 531.136 kb on + strand, within GFF3103at 531.136 kb on + strand, within GFF3103at 531.136 kb on + strand, within GFF3103at 531.137 kb on - strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.352 kb on + strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.353 kb on - strand, within GFF3103at 531.358 kb on + strand, within GFF3103at 531.358 kb on + strand, within GFF3103at 531.358 kb on + strand, within GFF3103at 531.359 kb on - strand, within GFF3103at 531.359 kb on - strand, within GFF3103at 531.359 kb on - strand, within GFF3103at 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.422 kb on + strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.423 kb on - strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.513 kb on + strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.514 kb on - strandat 531.543 kb on + strandat 531.543 kb on + strandat 531.543 kb on + strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strandat 531.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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529,567 + GFF3100 0.66 -0.0
529,567 + GFF3100 0.66 -0.8
529,567 + GFF3100 0.66 -0.1
529,567 + GFF3100 0.66 -0.0
529,567 + GFF3100 0.66 -0.3
529,568 - GFF3100 0.66 -0.8
529,568 - GFF3100 0.66 +1.5
529,568 - GFF3100 0.66 +0.3
529,568 - GFF3100 0.66 -0.6
529,568 - GFF3100 0.66 -0.9
529,568 - GFF3100 0.66 -0.0
529,568 - GFF3100 0.66 -0.0
529,568 - GFF3100 0.66 -0.7
529,568 - GFF3100 0.66 -1.0
529,568 - GFF3100 0.66 +0.3
529,666 + GFF3100 0.81 +0.5
529,666 + GFF3100 0.81 -1.3
529,666 + GFF3100 0.81 +1.0
529,666 + GFF3100 0.81 -0.5
529,666 + GFF3100 0.81 -0.2
529,666 + GFF3100 0.81 -0.2
529,666 + GFF3100 0.81 -0.3
529,666 + GFF3100 0.81 +0.2
529,666 + GFF3100 0.81 +1.3
529,666 + GFF3100 0.81 -0.7
529,667 - GFF3100 0.81 -0.4
529,667 - GFF3100 0.81 +0.0
529,667 - GFF3100 0.81 -0.3
529,667 - GFF3100 0.81 +0.3
529,667 - GFF3100 0.81 -1.3
529,667 - GFF3100 0.81 -0.2
529,667 - GFF3100 0.81 -0.6
529,667 - GFF3100 0.81 -0.0
529,667 - GFF3100 0.81 +0.4
529,667 - GFF3100 0.81 +0.5
529,940 + GFF3101 0.10 -0.8
529,941 - GFF3101 0.11 +0.0
529,941 - GFF3101 0.11 -0.9
530,056 + GFF3101 0.43 +0.0
530,056 + GFF3101 0.43 -1.2
530,056 + GFF3101 0.43 +1.3
530,056 + GFF3101 0.43 +0.3
530,056 + GFF3101 0.43 +1.1
530,056 + GFF3101 0.43 -0.1
530,057 - GFF3101 0.44 +0.1
530,057 - GFF3101 0.44 -0.1
530,186 + GFF3101 0.80 -0.8
530,186 + GFF3101 0.80 +0.1
530,186 + GFF3101 0.80 -0.9
530,186 + GFF3101 0.80 +0.7
530,187 - GFF3101 0.80 +0.3
530,187 - GFF3101 0.80 -1.0
530,187 - GFF3101 0.80 +0.2
530,187 - GFF3101 0.80 -0.7
530,187 - GFF3101 0.80 -1.1
530,187 - GFF3101 0.80 -0.2
530,187 - GFF3101 0.80 -0.1
530,187 - GFF3101 0.80 +1.5
530,187 - GFF3101 0.80 +0.2
530,187 - GFF3101 0.80 +1.0
530,187 - GFF3101 0.80 +0.5
530,187 - GFF3101 0.80 -0.0
530,950 + -0.0
530,951 - -1.0
530,951 - +1.1
531,026 - GFF3103 0.16 -0.0
531,026 - GFF3103 0.16 -1.2
531,085 + GFF3103 0.27 -1.1
531,085 + GFF3103 0.27 +3.9
531,085 + GFF3103 0.27 +0.3
531,085 + GFF3103 0.27 -0.5
531,085 + GFF3103 0.27 -0.6
531,085 + GFF3103 0.27 -0.2
531,085 + GFF3103 0.27 +1.5
531,085 + GFF3103 0.27 -1.3
531,085 + GFF3103 0.27 -0.2
531,085 + GFF3103 0.27 -0.2
531,085 + GFF3103 0.27 +1.5
531,086 - GFF3103 0.28 +0.1
531,086 - GFF3103 0.28 -0.8
531,086 - GFF3103 0.28 +0.3
531,086 - GFF3103 0.28 +1.2
531,086 - GFF3103 0.28 -0.0
531,086 - GFF3103 0.28 -0.2
531,086 - GFF3103 0.28 +0.3
531,086 - GFF3103 0.28 -0.5
531,086 - GFF3103 0.28 -0.3
531,086 - GFF3103 0.28 -1.0
531,086 - GFF3103 0.28 -0.0
531,086 - GFF3103 0.28 +0.2
531,136 + GFF3103 0.38 +0.2
531,136 + GFF3103 0.38 +0.5
531,136 + GFF3103 0.38 -0.5
531,137 - GFF3103 0.38 +0.5
531,352 + GFF3103 0.81 -0.2
531,352 + GFF3103 0.81 -0.5
531,352 + GFF3103 0.81 +0.2
531,352 + GFF3103 0.81 -0.7
531,352 + GFF3103 0.81 -0.8
531,352 + GFF3103 0.81 +0.5
531,353 - GFF3103 0.82 -1.5
531,353 - GFF3103 0.82 +0.2
531,353 - GFF3103 0.82 +0.1
531,353 - GFF3103 0.82 -0.7
531,353 - GFF3103 0.82 -1.8
531,358 + GFF3103 0.83 -0.8
531,358 + GFF3103 0.83 +0.2
531,358 + GFF3103 0.83 -0.3
531,359 - GFF3103 0.83 -0.5
531,359 - GFF3103 0.83 -1.3
531,359 - GFF3103 0.83 -0.8
531,422 + -0.3
531,422 + -0.8
531,422 + -1.5
531,422 + -1.0
531,422 + +0.4
531,422 + +0.5
531,423 - +0.6
531,423 - -0.5
531,423 - +0.7
531,423 - -0.0
531,423 - +1.9
531,423 - +1.9
531,513 + +0.8
531,513 + +1.2
531,513 + +1.9
531,513 + +0.1
531,513 + -1.0
531,513 + -0.3
531,513 + +1.0
531,513 + +0.0
531,513 + +0.7
531,514 - -0.2
531,514 - +0.1
531,514 - -0.6
531,514 - -0.0
531,514 - -0.7
531,514 - +0.3
531,514 - -1.5
531,514 - -0.3
531,543 + +0.3
531,543 + +0.5
531,543 + -1.1
531,544 - -0.0
531,544 - -0.0
531,544 - -0.3
531,544 - +0.7
531,544 - +0.2
531,544 - -0.4
531,544 - -0.7

Or see this region's nucleotide sequence