Strain Fitness in Variovorax sp. SCN45 around GFF3096

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3094 and GFF3095 are separated by 113 nucleotidesGFF3095 and GFF3096 are separated by 13 nucleotidesGFF3096 and GFF3097 are separated by 82 nucleotidesGFF3097 and GFF3098 are separated by 10 nucleotides GFF3094 - 17 kDa surface antigen, at 524,239 to 524,817 GFF3094 GFF3095 - FIG074102: hypothetical protein, at 524,931 to 525,257 GFF3095 GFF3096 - Argininosuccinate synthase (EC 6.3.4.5), at 525,271 to 526,611 GFF3096 GFF3097 - hypothetical protein, at 526,694 to 527,539 GFF3097 GFF3098 - UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.3.1.98), at 527,550 to 528,602 GFF3098 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1at 524.389 kb on - strand, within GFF3094at 524.401 kb on + strand, within GFF3094at 524.401 kb on + strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.410 kb on - strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.414 kb on - strand, within GFF3094at 524.414 kb on - strand, within GFF3094at 524.414 kb on - strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.653 kb on + strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.675 kb on - strand, within GFF3094at 524.675 kb on - strand, within GFF3094at 524.675 kb on - strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.695 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.708 kb on - strand, within GFF3094at 524.708 kb on - strand, within GFF3094at 524.714 kb on - strand, within GFF3094at 524.746 kb on + strand, within GFF3094at 524.746 kb on + strand, within GFF3094at 524.773 kb on + strandat 524.774 kb on - strandat 524.774 kb on - strandat 526.612 kb on + strandat 526.613 kb on - strandat 526.870 kb on + strand, within GFF3097at 526.870 kb on + strand, within GFF3097at 526.871 kb on - strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.896 kb on + strand, within GFF3097at 526.897 kb on - strand, within GFF3097at 526.897 kb on - strand, within GFF3097at 526.897 kb on - strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.926 kb on + strand, within GFF3097at 526.927 kb on - strand, within GFF3097at 526.927 kb on - strand, within GFF3097at 526.927 kb on - strand, within GFF3097at 526.927 kb on - strand, within GFF3097at 527.028 kb on + strand, within GFF3097at 527.028 kb on + strand, within GFF3097at 527.029 kb on - strand, within GFF3097at 527.075 kb on + strand, within GFF3097at 527.075 kb on + strand, within GFF3097at 527.076 kb on - strand, within GFF3097at 527.076 kb on - strand, within GFF3097at 527.076 kb on - strand, within GFF3097at 527.511 kb on + strandat 527.511 kb on + strandat 527.511 kb on + strandat 527.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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524,389 - GFF3094 0.26 -0.0
524,401 + GFF3094 0.28 -0.3
524,401 + GFF3094 0.28 -0.1
524,402 - GFF3094 0.28 -0.7
524,402 - GFF3094 0.28 -1.0
524,402 - GFF3094 0.28 -1.5
524,402 - GFF3094 0.28 -0.5
524,402 - GFF3094 0.28 -0.7
524,409 + GFF3094 0.29 -0.1
524,409 + GFF3094 0.29 -0.8
524,409 + GFF3094 0.29 -0.3
524,409 + GFF3094 0.29 +0.1
524,409 + GFF3094 0.29 -0.5
524,410 - GFF3094 0.30 -0.4
524,413 + GFF3094 0.30 -1.2
524,413 + GFF3094 0.30 -0.7
524,413 + GFF3094 0.30 +0.5
524,413 + GFF3094 0.30 +1.0
524,414 - GFF3094 0.30 -0.7
524,414 - GFF3094 0.30 +1.4
524,414 - GFF3094 0.30 +0.0
524,419 + GFF3094 0.31 -0.3
524,419 + GFF3094 0.31 +0.6
524,419 + GFF3094 0.31 -0.5
524,419 + GFF3094 0.31 -0.8
524,419 + GFF3094 0.31 +1.1
524,419 + GFF3094 0.31 -0.5
524,420 - GFF3094 0.31 -0.7
524,420 - GFF3094 0.31 +0.1
524,420 - GFF3094 0.31 -0.0
524,420 - GFF3094 0.31 +1.0
524,420 - GFF3094 0.31 -1.9
524,434 + GFF3094 0.34 -0.4
524,434 + GFF3094 0.34 +0.1
524,434 + GFF3094 0.34 -2.0
524,434 + GFF3094 0.34 -1.7
524,434 + GFF3094 0.34 +0.7
524,434 + GFF3094 0.34 +0.8
524,434 + GFF3094 0.34 +0.5
524,434 + GFF3094 0.34 -0.1
524,434 + GFF3094 0.34 -0.9
524,435 - GFF3094 0.34 +1.3
524,435 - GFF3094 0.34 +0.1
524,435 - GFF3094 0.34 -0.4
524,435 - GFF3094 0.34 +0.2
524,435 - GFF3094 0.34 -0.4
524,435 - GFF3094 0.34 -0.8
524,435 - GFF3094 0.34 +0.2
524,435 - GFF3094 0.34 -0.8
524,632 + GFF3094 0.68 +0.0
524,632 + GFF3094 0.68 -0.5
524,632 + GFF3094 0.68 +1.3
524,632 + GFF3094 0.68 +0.5
524,632 + GFF3094 0.68 +0.2
524,632 + GFF3094 0.68 -0.8
524,632 + GFF3094 0.68 -0.6
524,632 + GFF3094 0.68 -0.2
524,633 - GFF3094 0.68 +0.3
524,633 - GFF3094 0.68 -0.1
524,633 - GFF3094 0.68 -0.3
524,633 - GFF3094 0.68 -0.3
524,633 - GFF3094 0.68 -0.1
524,633 - GFF3094 0.68 +0.2
524,633 - GFF3094 0.68 +0.5
524,633 - GFF3094 0.68 -0.3
524,633 - GFF3094 0.68 +0.6
524,633 - GFF3094 0.68 -0.8
524,653 + GFF3094 0.72 -0.6
524,654 - GFF3094 0.72 -0.2
524,654 - GFF3094 0.72 -0.3
524,654 - GFF3094 0.72 -0.0
524,654 - GFF3094 0.72 +0.3
524,654 - GFF3094 0.72 -0.3
524,654 - GFF3094 0.72 +0.7
524,654 - GFF3094 0.72 +0.6
524,674 + GFF3094 0.75 -0.7
524,674 + GFF3094 0.75 -0.5
524,674 + GFF3094 0.75 -0.6
524,674 + GFF3094 0.75 +1.0
524,675 - GFF3094 0.75 +0.5
524,675 - GFF3094 0.75 -1.7
524,675 - GFF3094 0.75 -0.3
524,689 + GFF3094 0.78 +1.3
524,689 + GFF3094 0.78 -0.7
524,689 + GFF3094 0.78 -1.0
524,689 + GFF3094 0.78 +0.7
524,689 + GFF3094 0.78 +0.2
524,689 + GFF3094 0.78 -1.8
524,689 + GFF3094 0.78 +0.3
524,689 + GFF3094 0.78 -0.1
524,690 - GFF3094 0.78 -1.0
524,690 - GFF3094 0.78 -0.8
524,690 - GFF3094 0.78 -0.4
524,690 - GFF3094 0.78 +0.3
524,690 - GFF3094 0.78 -0.5
524,690 - GFF3094 0.78 +0.3
524,690 - GFF3094 0.78 +0.2
524,690 - GFF3094 0.78 -0.3
524,690 - GFF3094 0.78 -1.3
524,695 + GFF3094 0.79 -0.8
524,707 + GFF3094 0.81 -0.4
524,707 + GFF3094 0.81 -0.3
524,707 + GFF3094 0.81 -0.6
524,707 + GFF3094 0.81 +0.0
524,707 + GFF3094 0.81 -0.2
524,707 + GFF3094 0.81 -1.5
524,708 - GFF3094 0.81 -0.3
524,708 - GFF3094 0.81 +0.8
524,714 - GFF3094 0.82 +0.3
524,746 + GFF3094 0.88 -0.0
524,746 + GFF3094 0.88 +0.0
524,773 + -1.9
524,774 - +0.1
524,774 - +0.1
526,612 + +1.3
526,613 - +1.3
526,870 + GFF3097 0.21 -1.5
526,870 + GFF3097 0.21 -0.0
526,871 - GFF3097 0.21 -0.1
526,896 + GFF3097 0.24 +0.0
526,896 + GFF3097 0.24 +0.8
526,896 + GFF3097 0.24 -0.3
526,896 + GFF3097 0.24 -0.1
526,896 + GFF3097 0.24 +1.4
526,896 + GFF3097 0.24 -0.9
526,896 + GFF3097 0.24 -0.0
526,896 + GFF3097 0.24 -0.2
526,896 + GFF3097 0.24 +0.8
526,897 - GFF3097 0.24 -0.5
526,897 - GFF3097 0.24 +0.5
526,897 - GFF3097 0.24 -1.8
526,926 + GFF3097 0.27 +0.3
526,926 + GFF3097 0.27 +1.2
526,926 + GFF3097 0.27 -0.0
526,926 + GFF3097 0.27 -0.0
526,926 + GFF3097 0.27 +0.0
526,926 + GFF3097 0.27 +0.2
526,926 + GFF3097 0.27 +1.1
526,926 + GFF3097 0.27 -0.1
526,927 - GFF3097 0.28 -0.9
526,927 - GFF3097 0.28 -0.3
526,927 - GFF3097 0.28 -0.3
526,927 - GFF3097 0.28 -1.1
527,028 + GFF3097 0.39 -0.7
527,028 + GFF3097 0.39 -0.9
527,029 - GFF3097 0.40 -0.8
527,075 + GFF3097 0.45 -1.7
527,075 + GFF3097 0.45 -0.0
527,076 - GFF3097 0.45 -1.0
527,076 - GFF3097 0.45 +0.0
527,076 - GFF3097 0.45 -2.0
527,511 + -0.4
527,511 + -0.8
527,511 + +1.1
527,511 + +0.4

Or see this region's nucleotide sequence