Strain Fitness in Variovorax sp. SCN45 around GFF3040

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
471,465	+				+1.0
471,466	-				-0.5
471,466	-				-0.1
471,466	-				-0.5
471,741	+		GFF3039	0.41	-0.4
471,876	+		GFF3039	0.58	-0.3
471,876	+		GFF3039	0.58	-1.0
471,877	-		GFF3039	0.58	+1.5
471,877	-		GFF3039	0.58	+1.5
472,032	+		GFF3039	0.78	-1.3
472,204	+				-0.6
472,204	+				+0.0
472,205	-				-0.2
472,258	-				+0.1
473,135	+		GFF3040	0.33	+0.7
473,135	+		GFF3040	0.33	-0.1
473,135	+		GFF3040	0.33	-0.2
473,381	-		GFF3040	0.44	+1.0
473,384	+		GFF3040	0.44	+0.4
473,384	+		GFF3040	0.44	+1.5
473,385	-		GFF3040	0.44	-0.3
473,385	-		GFF3040	0.44	-0.9
473,703	+		GFF3040	0.58	+1.0
474,459	+				-1.0
474,460	-				-0.3
474,664	-				-0.3
474,910	+		GFF3041	0.16	-0.2
475,406	-		GFF3041	0.59	+0.7
475,406	-		GFF3041	0.59	-0.2
475,406	-		GFF3041	0.59	+0.3