Strain Fitness in Variovorax sp. SCN45 around GFF3039

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
470,812	+		GFF3038	0.47	-1.5
470,848	+		GFF3038	0.52	-0.6
470,950	-		GFF3038	0.67	+0.2
470,950	-		GFF3038	0.67	+0.3
470,950	-		GFF3038	0.67	+0.1
470,988	-		GFF3038	0.73	-1.2
471,465	+				+1.0
471,466	-				-0.5
471,466	-				-0.1
471,466	-				-0.5
471,741	+		GFF3039	0.41	-0.4
471,876	+		GFF3039	0.58	-0.3
471,876	+		GFF3039	0.58	-1.0
471,877	-		GFF3039	0.58	+1.5
471,877	-		GFF3039	0.58	+1.5
472,032	+		GFF3039	0.78	-1.3
472,204	+				-0.6
472,204	+				+0.0
472,205	-				-0.2
472,258	-				+0.1
473,135	+		GFF3040	0.33	+0.7
473,135	+		GFF3040	0.33	-0.1
473,135	+		GFF3040	0.33	-0.2