Strain Fitness in Variovorax sp. SCN45 around GFF2986

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2984 and GFF2985 are separated by 8 nucleotidesGFF2985 and GFF2986 are separated by 4 nucleotidesGFF2986 and GFF2987 are separated by 30 nucleotidesGFF2987 and GFF2988 are separated by 177 nucleotides GFF2984 - Adenosine deaminase (EC 3.5.4.4), at 414,489 to 415,586 GFF2984 GFF2985 - BUG/TctC family periplasmic protein, at 415,595 to 416,572 GFF2985 GFF2986 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 416,577 to 417,674 GFF2986 GFF2987 - CBS domain protein, at 417,705 to 418,157 GFF2987 GFF2988 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 418,335 to 419,639 GFF2988 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1 2at 415.676 kb on - strandat 415.706 kb on + strand, within GFF2985at 415.707 kb on - strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.857 kb on - strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.925 kb on + strand, within GFF2986at 416.926 kb on - strand, within GFF2986at 416.926 kb on - strand, within GFF2986at 417.054 kb on + strand, within GFF2986at 417.054 kb on + strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.417 kb on + strand, within GFF2986at 417.418 kb on - strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.477 kb on + strand, within GFF2986at 417.478 kb on - strand, within GFF2986at 417.478 kb on - strand, within GFF2986at 417.579 kb on + strandat 417.580 kb on - strandat 417.580 kb on - strandat 417.580 kb on - strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.745 kb on + strandat 417.746 kb on - strandat 417.746 kb on - strandat 417.746 kb on - strandat 417.746 kb on - strandat 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.805 kb on + strand, within GFF2987at 417.806 kb on - strand, within GFF2987at 417.806 kb on - strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.853 kb on + strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 417.854 kb on - strand, within GFF2987at 418.201 kb on + strandat 418.201 kb on + strandat 418.201 kb on + strandat 418.201 kb on + strandat 418.201 kb on + strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.202 kb on - strandat 418.228 kb on + strandat 418.230 kb on + strandat 418.230 kb on + strandat 418.230 kb on + strandat 418.231 kb on - strandat 418.231 kb on - strandat 418.288 kb on + strandat 418.288 kb on + strandat 418.289 kb on - strandat 418.506 kb on + strand, within GFF2988at 418.507 kb on - strand, within GFF2988at 418.561 kb on + strand, within GFF2988at 418.671 kb on + strand, within GFF2988

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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415,676 - +1.1
415,706 + GFF2985 0.11 -0.4
415,707 - GFF2985 0.11 -0.8
415,856 + GFF2985 0.27 -1.0
415,856 + GFF2985 0.27 -1.6
415,856 + GFF2985 0.27 -0.1
415,857 - GFF2985 0.27 -0.3
416,057 + GFF2985 0.47 -0.1
416,057 + GFF2985 0.47 +0.1
416,057 + GFF2985 0.47 -1.7
416,057 + GFF2985 0.47 +0.1
416,057 + GFF2985 0.47 -2.2
416,058 - GFF2985 0.47 +1.2
416,058 - GFF2985 0.47 +0.1
416,058 - GFF2985 0.47 -0.0
416,058 - GFF2985 0.47 -1.4
416,058 - GFF2985 0.47 -0.6
416,063 + GFF2985 0.48 -0.3
416,063 + GFF2985 0.48 +0.3
416,063 + GFF2985 0.48 +1.1
416,063 + GFF2985 0.48 +0.2
416,063 + GFF2985 0.48 -0.5
416,063 + GFF2985 0.48 -0.8
416,064 - GFF2985 0.48 -0.6
416,064 - GFF2985 0.48 -1.2
416,064 - GFF2985 0.48 -0.6
416,925 + GFF2986 0.32 -0.2
416,926 - GFF2986 0.32 -0.4
416,926 - GFF2986 0.32 -0.1
417,054 + GFF2986 0.43 -0.8
417,054 + GFF2986 0.43 -1.6
417,055 - GFF2986 0.44 -1.0
417,055 - GFF2986 0.44 -0.4
417,055 - GFF2986 0.44 +0.2
417,055 - GFF2986 0.44 +0.1
417,055 - GFF2986 0.44 -0.2
417,055 - GFF2986 0.44 -0.8
417,243 + GFF2986 0.61 +0.2
417,243 + GFF2986 0.61 -1.9
417,243 + GFF2986 0.61 -1.1
417,243 + GFF2986 0.61 +0.8
417,243 + GFF2986 0.61 +0.6
417,243 + GFF2986 0.61 -1.7
417,244 - GFF2986 0.61 +0.5
417,244 - GFF2986 0.61 -0.6
417,244 - GFF2986 0.61 -1.2
417,244 - GFF2986 0.61 -0.2
417,244 - GFF2986 0.61 -0.8
417,417 + GFF2986 0.77 -2.0
417,418 - GFF2986 0.77 -0.8
417,456 + GFF2986 0.80 -0.9
417,456 + GFF2986 0.80 +0.4
417,456 + GFF2986 0.80 -0.2
417,457 - GFF2986 0.80 +1.1
417,457 - GFF2986 0.80 -0.6
417,457 - GFF2986 0.80 +0.0
417,457 - GFF2986 0.80 +0.1
417,457 - GFF2986 0.80 -0.2
417,477 + GFF2986 0.82 +0.4
417,478 - GFF2986 0.82 +1.1
417,478 - GFF2986 0.82 -1.2
417,579 + +0.4
417,580 - -0.2
417,580 - -0.2
417,580 - -0.4
417,745 + -0.4
417,745 + -0.5
417,745 + +0.0
417,745 + -0.5
417,745 + +0.2
417,745 + -0.4
417,745 + -0.4
417,745 + -0.8
417,746 - -0.6
417,746 - -0.7
417,746 - +0.1
417,746 - -0.0
417,805 + GFF2987 0.22 +1.5
417,805 + GFF2987 0.22 +0.5
417,805 + GFF2987 0.22 -0.3
417,805 + GFF2987 0.22 -0.6
417,805 + GFF2987 0.22 -0.4
417,806 - GFF2987 0.22 -0.4
417,806 - GFF2987 0.22 -0.0
417,853 + GFF2987 0.33 +0.1
417,853 + GFF2987 0.33 -0.2
417,853 + GFF2987 0.33 -0.7
417,853 + GFF2987 0.33 -0.0
417,853 + GFF2987 0.33 -0.5
417,853 + GFF2987 0.33 -0.2
417,853 + GFF2987 0.33 -0.2
417,854 - GFF2987 0.33 -0.8
417,854 - GFF2987 0.33 -0.1
417,854 - GFF2987 0.33 +0.5
417,854 - GFF2987 0.33 +0.5
417,854 - GFF2987 0.33 -0.9
418,201 + +0.3
418,201 + +0.0
418,201 + -0.7
418,201 + -0.0
418,201 + -0.0
418,202 - -0.4
418,202 - -0.0
418,202 - -0.6
418,202 - -0.9
418,202 - +0.7
418,202 - -0.5
418,202 - -0.5
418,202 - -0.0
418,202 - +2.0
418,228 + -2.0
418,230 + +1.8
418,230 + -1.2
418,230 + -0.2
418,231 - +0.0
418,231 - +0.2
418,288 + -0.5
418,288 + +1.1
418,289 - -0.5
418,506 + GFF2988 0.13 +0.4
418,507 - GFF2988 0.13 -0.3
418,561 + GFF2988 0.17 -0.2
418,671 + GFF2988 0.26 -0.5

Or see this region's nucleotide sequence