Strain Fitness in Variovorax sp. SCN45 around GFF2975

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2973 and GFF2974 are separated by 62 nucleotidesGFF2974 and GFF2975 are separated by 35 nucleotidesGFF2975 and GFF2976 are separated by 41 nucleotides GFF2973 - Transcriptional regulator, at 405,455 to 406,033 GFF2973 GFF2974 - Cell division inhibitor, at 406,096 to 406,518 GFF2974 GFF2975 - SAM-dependent methyltransferase, at 406,554 to 407,510 GFF2975 GFF2976 - hypothetical protein, at 407,552 to 408,604 GFF2976 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1 2at 405.698 kb on + strand, within GFF2973at 406.136 kb on - strandat 406.136 kb on - strandat 406.136 kb on - strandat 406.414 kb on + strand, within GFF2974at 406.415 kb on - strand, within GFF2974at 406.415 kb on - strand, within GFF2974at 406.439 kb on - strand, within GFF2974at 406.559 kb on + strandat 406.559 kb on + strandat 406.560 kb on - strandat 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.683 kb on + strand, within GFF2975at 406.683 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 407.010 kb on + strand, within GFF2975at 407.011 kb on - strand, within GFF2975at 407.011 kb on - strand, within GFF2975at 407.074 kb on - strand, within GFF2975at 407.433 kb on + strandat 407.433 kb on + strandat 407.433 kb on + strandat 407.433 kb on + strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.475 kb on + strandat 407.476 kb on - strandat 407.756 kb on + strand, within GFF2976at 407.756 kb on + strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.829 kb on - strand, within GFF2976at 407.829 kb on - strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 408.008 kb on + strand, within GFF2976at 408.008 kb on + strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.186 kb on - strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.497 kb on + strand, within GFF2976

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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405,698 + GFF2973 0.42 -1.1
406,136 - -0.8
406,136 - -0.6
406,136 - +0.2
406,414 + GFF2974 0.75 -1.5
406,415 - GFF2974 0.75 +0.8
406,415 - GFF2974 0.75 -0.3
406,439 - GFF2974 0.81 -0.5
406,559 + +0.0
406,559 + -0.5
406,560 - +0.2
406,659 + GFF2975 0.11 -1.6
406,659 + GFF2975 0.11 -0.8
406,659 + GFF2975 0.11 +0.7
406,659 + GFF2975 0.11 -0.8
406,659 + GFF2975 0.11 +0.2
406,659 + GFF2975 0.11 +0.2
406,659 + GFF2975 0.11 -1.0
406,659 + GFF2975 0.11 -0.4
406,659 + GFF2975 0.11 -0.0
406,660 - GFF2975 0.11 +0.3
406,660 - GFF2975 0.11 -0.0
406,660 - GFF2975 0.11 +0.5
406,660 - GFF2975 0.11 -0.8
406,660 - GFF2975 0.11 -0.6
406,660 - GFF2975 0.11 -0.7
406,683 + GFF2975 0.13 +0.3
406,683 + GFF2975 0.13 -0.2
406,704 + GFF2975 0.16 +0.0
406,704 + GFF2975 0.16 -0.6
406,704 + GFF2975 0.16 -0.3
406,704 + GFF2975 0.16 -1.1
406,704 + GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 -0.5
406,705 - GFF2975 0.16 +0.5
406,705 - GFF2975 0.16 +2.3
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 -0.6
406,705 - GFF2975 0.16 +0.9
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 -0.5
406,705 - GFF2975 0.16 -0.7
406,909 - GFF2975 0.37 +0.7
406,909 - GFF2975 0.37 -1.3
406,909 - GFF2975 0.37 -1.0
407,010 + GFF2975 0.48 -0.2
407,011 - GFF2975 0.48 +0.1
407,011 - GFF2975 0.48 -0.2
407,074 - GFF2975 0.54 -0.5
407,433 + +0.4
407,433 + +0.1
407,433 + +1.1
407,433 + +0.8
407,434 - +0.4
407,434 - -0.0
407,434 - -1.0
407,434 - -0.6
407,434 - -0.5
407,434 - -0.4
407,434 - -0.0
407,475 + +0.2
407,476 - +0.8
407,756 + GFF2976 0.19 +0.0
407,756 + GFF2976 0.19 +0.8
407,757 - GFF2976 0.19 +1.5
407,757 - GFF2976 0.19 +0.4
407,757 - GFF2976 0.19 +0.7
407,792 + GFF2976 0.23 -0.0
407,792 + GFF2976 0.23 -0.3
407,792 + GFF2976 0.23 +1.8
407,792 + GFF2976 0.23 +0.3
407,792 + GFF2976 0.23 +1.3
407,792 + GFF2976 0.23 -0.1
407,792 + GFF2976 0.23 -0.3
407,792 + GFF2976 0.23 -1.8
407,792 + GFF2976 0.23 +0.1
407,793 - GFF2976 0.23 -0.0
407,793 - GFF2976 0.23 +1.5
407,793 - GFF2976 0.23 -1.7
407,793 - GFF2976 0.23 -0.3
407,793 - GFF2976 0.23 +0.1
407,793 - GFF2976 0.23 -0.2
407,793 - GFF2976 0.23 +0.3
407,793 - GFF2976 0.23 +0.4
407,828 + GFF2976 0.26 +0.2
407,828 + GFF2976 0.26 -0.6
407,828 + GFF2976 0.26 -0.7
407,829 - GFF2976 0.26 +0.5
407,829 - GFF2976 0.26 -0.0
407,831 + GFF2976 0.26 +0.4
407,831 + GFF2976 0.26 -1.2
407,831 + GFF2976 0.26 +1.1
407,831 + GFF2976 0.26 -0.3
407,831 + GFF2976 0.26 -0.2
407,831 + GFF2976 0.26 -0.7
407,831 + GFF2976 0.26 -0.0
407,831 + GFF2976 0.26 +0.3
407,831 + GFF2976 0.26 -1.1
407,831 + GFF2976 0.26 +0.2
407,832 - GFF2976 0.27 -0.1
407,832 - GFF2976 0.27 -0.4
407,832 - GFF2976 0.27 -0.2
407,832 - GFF2976 0.27 +0.6
407,832 - GFF2976 0.27 -0.1
407,832 - GFF2976 0.27 +0.1
407,832 - GFF2976 0.27 +0.2
408,008 + GFF2976 0.43 -0.1
408,008 + GFF2976 0.43 -0.6
408,009 - GFF2976 0.43 +0.0
408,009 - GFF2976 0.43 +0.8
408,009 - GFF2976 0.43 -0.4
408,186 - GFF2976 0.60 -0.0
408,395 + GFF2976 0.80 +0.1
408,395 + GFF2976 0.80 +0.3
408,395 + GFF2976 0.80 -0.2
408,419 + GFF2976 0.82 +0.1
408,419 + GFF2976 0.82 -0.2
408,419 + GFF2976 0.82 -0.2
408,419 + GFF2976 0.82 -0.3
408,419 + GFF2976 0.82 +0.5
408,419 + GFF2976 0.82 +0.2
408,420 - GFF2976 0.82 +0.0
408,420 - GFF2976 0.82 +0.2
408,420 - GFF2976 0.82 -0.8
408,497 + GFF2976 0.90 -0.2

Or see this region's nucleotide sequence