Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2924 and GFF2925 are separated by 92 nucleotides GFF2925 and GFF2926 are separated by 179 nucleotides GFF2926 and GFF2927 are separated by 85 nucleotides
GFF2924 - BUG/TctC family periplasmic protein, at 351,143 to 352,135
GFF2924
GFF2925 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 352,228 to 353,079
GFF2925
GFF2926 - FIG00349048: hypothetical protein, at 353,259 to 353,702
GFF2926
GFF2927 - Peptidylprolyl isomerase, FKBP-type (EC 5.2.1.8), at 353,788 to 354,138
GFF2927
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 351.251 kb on + strand, within GFF2924 at 351.251 kb on + strand, within GFF2924 at 351.251 kb on + strand, within GFF2924 at 351.251 kb on + strand, within GFF2924 at 351.251 kb on + strand, within GFF2924 at 351.252 kb on - strand, within GFF2924 at 351.252 kb on - strand, within GFF2924 at 351.252 kb on - strand, within GFF2924 at 351.464 kb on + strand, within GFF2924 at 351.464 kb on + strand, within GFF2924 at 351.465 kb on - strand, within GFF2924 at 351.465 kb on - strand, within GFF2924 at 351.479 kb on + strand, within GFF2924 at 351.479 kb on + strand, within GFF2924 at 351.480 kb on - strand, within GFF2924 at 351.560 kb on + strand, within GFF2924 at 351.560 kb on + strand, within GFF2924 at 351.560 kb on + strand, within GFF2924 at 351.560 kb on + strand, within GFF2924 at 351.560 kb on + strand, within GFF2924 at 351.560 kb on + strand, within GFF2924 at 351.561 kb on - strand, within GFF2924 at 351.561 kb on - strand, within GFF2924 at 351.671 kb on + strand, within GFF2924 at 351.671 kb on + strand, within GFF2924 at 351.671 kb on + strand, within GFF2924 at 351.671 kb on + strand, within GFF2924 at 351.671 kb on + strand, within GFF2924 at 351.672 kb on - strand, within GFF2924 at 351.672 kb on - strand, within GFF2924 at 351.672 kb on - strand, within GFF2924 at 351.672 kb on - strand, within GFF2924 at 351.672 kb on - strand, within GFF2924 at 351.672 kb on - strand, within GFF2924 at 351.704 kb on + strand, within GFF2924 at 351.704 kb on + strand, within GFF2924 at 351.704 kb on + strand, within GFF2924 at 351.704 kb on + strand, within GFF2924 at 351.705 kb on - strand, within GFF2924 at 351.705 kb on - strand, within GFF2924 at 352.133 kb on + strand at 352.133 kb on + strand at 352.133 kb on + strand at 352.133 kb on + strand at 352.133 kb on + strand at 352.133 kb on + strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.134 kb on - strand at 352.164 kb on + strand at 352.164 kb on + strand at 352.165 kb on - strand at 352.165 kb on - strand at 352.165 kb on - strand at 352.187 kb on + strand at 352.188 kb on - strand at 352.188 kb on - strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.189 kb on + strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 352.190 kb on - strand at 353.065 kb on + strand at 353.066 kb on - strand at 353.066 kb on - strand at 353.066 kb on - strand at 353.116 kb on + strand at 353.116 kb on + strand at 353.117 kb on - strand at 353.120 kb on + strand at 353.152 kb on + strand at 353.153 kb on - strand at 353.154 kb on + strand at 353.154 kb on + strand at 353.154 kb on + strand at 353.155 kb on - strand at 353.155 kb on - strand at 353.155 kb on - strand at 353.180 kb on + strand at 353.181 kb on - strand at 353.264 kb on + strand at 353.264 kb on + strand at 353.264 kb on + strand at 353.264 kb on + strand at 353.264 kb on + strand at 353.265 kb on - strand at 353.265 kb on - strand at 353.265 kb on - strand at 353.265 kb on - strand at 353.265 kb on - strand at 353.265 kb on - strand at 353.265 kb on - strand at 353.316 kb on + strand, within GFF2926 at 353.317 kb on - strand, within GFF2926 at 353.317 kb on - strand, within GFF2926 at 353.317 kb on - strand, within GFF2926 at 353.469 kb on + strand, within GFF2926 at 353.469 kb on + strand, within GFF2926 at 353.469 kb on + strand, within GFF2926 at 353.469 kb on + strand, within GFF2926 at 353.470 kb on - strand, within GFF2926 at 353.470 kb on - strand, within GFF2926 at 353.470 kb on - strand, within GFF2926 at 353.470 kb on - strand, within GFF2926 at 353.470 kb on - strand, within GFF2926 at 353.470 kb on - strand, within GFF2926 at 353.734 kb on + strand at 353.734 kb on + strand at 353.735 kb on - strand at 353.735 kb on - strand at 353.815 kb on + strand at 353.815 kb on + strand at 353.815 kb on + strand at 353.815 kb on + strand at 353.815 kb on + strand at 353.815 kb on + strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.816 kb on - strand at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.878 kb on + strand, within GFF2927 at 353.879 kb on - strand, within GFF2927 at 353.879 kb on - strand, within GFF2927 at 353.879 kb on - strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.893 kb on + strand, within GFF2927 at 353.894 kb on - strand, within GFF2927 at 353.894 kb on - strand, within GFF2927 at 353.894 kb on - strand, within GFF2927 at 353.894 kb on - strand, within GFF2927 at 353.894 kb on - strand, within GFF2927 at 353.894 kb on - strand, within GFF2927 at 353.894 kb on - strand, within GFF2927 at 354.058 kb on + strand, within GFF2927 at 354.058 kb on + strand, within GFF2927 at 354.058 kb on + strand, within GFF2927 at 354.058 kb on + strand, within GFF2927 at 354.058 kb on + strand, within GFF2927 at 354.058 kb on + strand, within GFF2927 at 354.058 kb on + strand, within GFF2927 at 354.059 kb on - strand, within GFF2927 at 354.059 kb on - strand, within GFF2927 at 354.059 kb on - strand, within GFF2927
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 351,251 + GFF2924 0.11 +0.2 351,251 + GFF2924 0.11 -0.4 351,251 + GFF2924 0.11 -0.4 351,251 + GFF2924 0.11 -0.7 351,251 + GFF2924 0.11 +1.0 351,252 - GFF2924 0.11 +1.0 351,252 - GFF2924 0.11 +0.2 351,252 - GFF2924 0.11 -0.9 351,464 + GFF2924 0.32 +0.2 351,464 + GFF2924 0.32 -2.1 351,465 - GFF2924 0.32 -0.9 351,465 - GFF2924 0.32 -0.6 351,479 + GFF2924 0.34 -0.9 351,479 + GFF2924 0.34 -0.7 351,480 - GFF2924 0.34 +0.9 351,560 + GFF2924 0.42 +0.5 351,560 + GFF2924 0.42 -0.9 351,560 + GFF2924 0.42 +0.2 351,560 + GFF2924 0.42 -0.3 351,560 + GFF2924 0.42 +0.4 351,560 + GFF2924 0.42 -0.2 351,561 - GFF2924 0.42 +1.5 351,561 - GFF2924 0.42 -0.1 351,671 + GFF2924 0.53 -0.7 351,671 + GFF2924 0.53 -0.2 351,671 + GFF2924 0.53 +0.3 351,671 + GFF2924 0.53 -0.0 351,671 + GFF2924 0.53 +0.0 351,672 - GFF2924 0.53 -0.3 351,672 - GFF2924 0.53 +0.6 351,672 - GFF2924 0.53 +0.1 351,672 - GFF2924 0.53 -0.5 351,672 - GFF2924 0.53 -0.2 351,672 - GFF2924 0.53 -0.4 351,704 + GFF2924 0.56 -0.5 351,704 + GFF2924 0.56 -0.1 351,704 + GFF2924 0.56 -0.9 351,704 + GFF2924 0.56 +0.1 351,705 - GFF2924 0.57 -0.5 351,705 - GFF2924 0.57 +1.4 352,133 + +0.2 352,133 + -0.4 352,133 + +0.6 352,133 + -0.1 352,133 + -1.1 352,133 + +0.5 352,134 - -2.1 352,134 - -0.2 352,134 - -0.2 352,134 - -0.1 352,134 - +0.5 352,134 - -0.1 352,134 - -0.1 352,134 - -0.1 352,134 - +0.8 352,134 - +0.5 352,134 - -1.1 352,164 + -0.3 352,164 + +0.1 352,165 - +0.9 352,165 - +0.6 352,165 - -0.9 352,187 + +0.0 352,188 - -0.2 352,188 - -0.2 352,189 + -0.1 352,189 + +0.7 352,189 + -0.5 352,189 + -0.6 352,189 + -0.9 352,189 + +0.2 352,189 + -0.5 352,189 + -0.4 352,189 + -0.8 352,189 + -0.2 352,189 + +0.5 352,189 + -0.1 352,190 - -0.1 352,190 - +0.7 352,190 - +0.1 352,190 - -0.2 352,190 - -0.4 352,190 - -0.3 352,190 - +0.3 352,190 - +0.1 352,190 - -0.4 352,190 - -0.7 352,190 - -0.1 352,190 - +1.9 352,190 - -0.5 352,190 - -1.7 352,190 - +0.0 352,190 - -2.2 352,190 - -0.5 352,190 - -0.2 352,190 - +0.5 352,190 - +0.3 352,190 - -1.3 353,065 + +0.1 353,066 - +0.9 353,066 - +0.4 353,066 - -0.6 353,116 + +0.7 353,116 + +0.3 353,117 - +1.0 353,120 + -0.9 353,152 + -0.8 353,153 - -0.1 353,154 + -0.2 353,154 + +0.8 353,154 + +0.9 353,155 - -0.9 353,155 - +1.1 353,155 - +1.3 353,180 + -0.1 353,181 - -0.3 353,264 + -0.0 353,264 + +0.4 353,264 + -1.8 353,264 + -1.1 353,264 + -1.7 353,265 - -0.7 353,265 - -0.3 353,265 - -0.5 353,265 - +0.1 353,265 - +0.1 353,265 - -2.3 353,265 - +2.5 353,316 + GFF2926 0.13 +0.3 353,317 - GFF2926 0.13 -0.7 353,317 - GFF2926 0.13 -1.1 353,317 - GFF2926 0.13 +0.2 353,469 + GFF2926 0.47 -1.6 353,469 + GFF2926 0.47 +0.5 353,469 + GFF2926 0.47 +0.7 353,469 + GFF2926 0.47 -1.3 353,470 - GFF2926 0.48 +0.6 353,470 - GFF2926 0.48 -1.1 353,470 - GFF2926 0.48 -0.5 353,470 - GFF2926 0.48 +0.1 353,470 - GFF2926 0.48 +0.0 353,470 - GFF2926 0.48 -0.5 353,734 + -0.7 353,734 + +0.4 353,735 - -1.4 353,735 - -0.9 353,815 + +0.3 353,815 + -0.3 353,815 + +0.1 353,815 + -1.2 353,815 + -0.4 353,815 + +0.4 353,816 - +0.3 353,816 - -0.3 353,816 - -0.1 353,816 - -0.7 353,816 - +0.5 353,816 - -0.8 353,816 - -0.2 353,816 - +0.1 353,816 - -0.8 353,816 - -0.3 353,878 + GFF2927 0.26 -0.3 353,878 + GFF2927 0.26 +0.5 353,878 + GFF2927 0.26 -0.5 353,878 + GFF2927 0.26 +0.5 353,878 + GFF2927 0.26 +0.1 353,878 + GFF2927 0.26 -0.5 353,878 + GFF2927 0.26 +0.2 353,878 + GFF2927 0.26 +0.1 353,878 + GFF2927 0.26 +0.3 353,878 + GFF2927 0.26 -0.0 353,879 - GFF2927 0.26 +1.5 353,879 - GFF2927 0.26 -0.4 353,879 - GFF2927 0.26 +0.5 353,893 + GFF2927 0.30 -0.1 353,893 + GFF2927 0.30 +3.1 353,893 + GFF2927 0.30 -0.4 353,893 + GFF2927 0.30 +1.0 353,893 + GFF2927 0.30 -1.1 353,893 + GFF2927 0.30 -0.1 353,893 + GFF2927 0.30 +0.5 353,893 + GFF2927 0.30 -0.8 353,893 + GFF2927 0.30 -1.0 353,894 - GFF2927 0.30 +0.1 353,894 - GFF2927 0.30 +0.7 353,894 - GFF2927 0.30 -0.3 353,894 - GFF2927 0.30 -0.7 353,894 - GFF2927 0.30 +0.5 353,894 - GFF2927 0.30 +0.5 353,894 - GFF2927 0.30 -0.4 354,058 + GFF2927 0.77 -1.0 354,058 + GFF2927 0.77 -0.5 354,058 + GFF2927 0.77 -0.3 354,058 + GFF2927 0.77 -0.8 354,058 + GFF2927 0.77 -0.7 354,058 + GFF2927 0.77 -0.1 354,058 + GFF2927 0.77 -0.4 354,059 - GFF2927 0.77 -0.1 354,059 - GFF2927 0.77 -0.2 354,059 - GFF2927 0.77 +0.1
Or see this region's nucleotide sequence