Strain Fitness in Variovorax sp. SCN45 around GFF29

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF28 and GFF29 are separated by 145 nucleotidesGFF29 and GFF30 are separated by 117 nucleotides GFF28 - hypothetical protein, at 32,350 to 33,246 GFF28 GFF29 - tRNA-modifying protein YgfZ, at 33,392 to 34,327 GFF29 GFF30 - Murein endolytic transglycosylase MltG, at 34,445 to 35,467 GFF30 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 32.480 kb on + strand, within GFF28at 32.481 kb on - strand, within GFF28at 32.543 kb on + strand, within GFF28at 32.543 kb on + strand, within GFF28at 32.543 kb on + strand, within GFF28at 32.543 kb on + strand, within GFF28at 32.543 kb on + strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.544 kb on - strand, within GFF28at 32.918 kb on + strand, within GFF28at 32.918 kb on + strand, within GFF28at 32.918 kb on + strand, within GFF28at 32.918 kb on + strand, within GFF28at 32.918 kb on + strand, within GFF28at 32.919 kb on - strand, within GFF28at 32.919 kb on - strand, within GFF28at 32.919 kb on - strand, within GFF28at 32.919 kb on - strand, within GFF28at 33.026 kb on + strand, within GFF28at 33.027 kb on - strand, within GFF28at 33.027 kb on - strand, within GFF28at 33.056 kb on + strand, within GFF28at 33.056 kb on + strand, within GFF28at 33.057 kb on - strand, within GFF28at 33.057 kb on - strand, within GFF28at 33.057 kb on - strand, within GFF28at 33.074 kb on + strand, within GFF28at 33.161 kb on + strandat 33.162 kb on - strandat 33.162 kb on - strandat 33.162 kb on - strandat 33.286 kb on - strandat 33.429 kb on - strandat 34.336 kb on + strandat 34.336 kb on + strandat 34.931 kb on + strand, within GFF30at 34.931 kb on + strand, within GFF30at 34.937 kb on + strand, within GFF30at 35.183 kb on + strand, within GFF30at 35.183 kb on + strand, within GFF30at 35.183 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30at 35.255 kb on + strand, within GFF30

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
32,480 + GFF28 0.14 -0.5
32,481 - GFF28 0.15 -0.4
32,543 + GFF28 0.22 -0.7
32,543 + GFF28 0.22 -0.6
32,543 + GFF28 0.22 -0.4
32,543 + GFF28 0.22 -0.3
32,543 + GFF28 0.22 -1.1
32,544 - GFF28 0.22 -0.4
32,544 - GFF28 0.22 +0.6
32,544 - GFF28 0.22 +0.6
32,544 - GFF28 0.22 -0.4
32,544 - GFF28 0.22 -0.0
32,544 - GFF28 0.22 -0.4
32,544 - GFF28 0.22 -1.2
32,544 - GFF28 0.22 -0.8
32,544 - GFF28 0.22 -1.4
32,544 - GFF28 0.22 -0.5
32,918 + GFF28 0.63 +0.7
32,918 + GFF28 0.63 +0.6
32,918 + GFF28 0.63 +0.9
32,918 + GFF28 0.63 -1.6
32,918 + GFF28 0.63 -0.4
32,919 - GFF28 0.63 -0.5
32,919 - GFF28 0.63 +2.4
32,919 - GFF28 0.63 -0.2
32,919 - GFF28 0.63 -1.1
33,026 + GFF28 0.75 -0.3
33,027 - GFF28 0.75 -1.4
33,027 - GFF28 0.75 +0.1
33,056 + GFF28 0.79 +0.1
33,056 + GFF28 0.79 -0.1
33,057 - GFF28 0.79 -0.8
33,057 - GFF28 0.79 +0.3
33,057 - GFF28 0.79 -1.6
33,074 + GFF28 0.81 -2.4
33,161 + +0.6
33,162 - -0.4
33,162 - +0.5
33,162 - +0.2
33,286 - -0.8
33,429 - -2.5
34,336 + -0.5
34,336 + -0.1
34,931 + GFF30 0.48 -1.2
34,931 + GFF30 0.48 -0.8
34,937 + GFF30 0.48 +0.8
35,183 + GFF30 0.72 +1.2
35,183 + GFF30 0.72 -1.5
35,183 + GFF30 0.72 -0.0
35,255 + GFF30 0.79 -1.1
35,255 + GFF30 0.79 +1.2
35,255 + GFF30 0.79 -0.5
35,255 + GFF30 0.79 -2.0
35,255 + GFF30 0.79 +0.6
35,255 + GFF30 0.79 -0.3
35,255 + GFF30 0.79 +0.2
35,255 + GFF30 0.79 -1.0
35,255 + GFF30 0.79 -0.6
35,255 + GFF30 0.79 -0.4

Or see this region's nucleotide sequence