Strain Fitness in Variovorax sp. SCN45 around GFF2878

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2877 and GFF2878 are separated by 64 nucleotidesGFF2878 and GFF2879 are separated by 296 nucleotides GFF2877 - Ribonuclease BN, at 299,763 to 300,710 GFF2877 GFF2878 - DNA primase DnaG, at 300,775 to 302,820 GFF2878 GFF2879 - RNA polymerase sigma factor RpoD, at 303,117 to 305,447 GFF2879 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 299.846 kb on + strandat 299.863 kb on + strand, within GFF2877at 299.864 kb on - strand, within GFF2877at 299.864 kb on - strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.987 kb on - strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.134 kb on - strand, within GFF2877at 300.134 kb on - strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.273 kb on - strand, within GFF2877at 300.487 kb on + strand, within GFF2877at 300.487 kb on + strand, within GFF2877at 300.488 kb on - strand, within GFF2877at 300.488 kb on - strand, within GFF2877at 300.583 kb on + strand, within GFF2877at 300.583 kb on + strand, within GFF2877at 300.583 kb on + strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.649 kb on - strandat 300.649 kb on - strandat 300.649 kb on - strandat 300.734 kb on + strandat 300.734 kb on + strandat 300.734 kb on + strandat 300.734 kb on + strandat 300.735 kb on - strandat 300.735 kb on - strandat 300.735 kb on - strandat 300.769 kb on + strandat 300.769 kb on + strandat 300.770 kb on - strandat 300.790 kb on + strandat 300.790 kb on + strandat 300.790 kb on + strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 302.837 kb on + strandat 302.838 kb on - strandat 302.838 kb on - strandat 302.838 kb on - strandat 302.839 kb on + strandat 302.844 kb on + strandat 302.844 kb on + strandat 302.844 kb on + strandat 302.867 kb on + strandat 302.867 kb on + strandat 302.925 kb on + strandat 302.925 kb on + strandat 302.925 kb on + strandat 302.948 kb on + strandat 302.949 kb on - strandat 303.105 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.116 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strandat 303.215 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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299,846 + -0.9
299,863 + GFF2877 0.11 +0.3
299,864 - GFF2877 0.11 -0.3
299,864 - GFF2877 0.11 -1.0
299,953 + GFF2877 0.20 +0.5
299,953 + GFF2877 0.20 -1.4
299,953 + GFF2877 0.20 -1.7
299,953 + GFF2877 0.20 -0.8
299,954 - GFF2877 0.20 +0.6
299,954 - GFF2877 0.20 -0.8
299,954 - GFF2877 0.20 -0.3
299,954 - GFF2877 0.20 -0.1
299,986 + GFF2877 0.24 -1.1
299,986 + GFF2877 0.24 -1.0
299,986 + GFF2877 0.24 -0.5
299,986 + GFF2877 0.24 -0.2
299,986 + GFF2877 0.24 -0.1
299,986 + GFF2877 0.24 -1.3
299,987 - GFF2877 0.24 +0.6
300,088 + GFF2877 0.34 +0.3
300,088 + GFF2877 0.34 +0.2
300,088 + GFF2877 0.34 -0.2
300,088 + GFF2877 0.34 +0.5
300,089 - GFF2877 0.34 +1.5
300,089 - GFF2877 0.34 +0.3
300,089 - GFF2877 0.34 -0.7
300,133 + GFF2877 0.39 +0.5
300,133 + GFF2877 0.39 -0.7
300,133 + GFF2877 0.39 -0.4
300,133 + GFF2877 0.39 +0.6
300,134 - GFF2877 0.39 +0.1
300,134 - GFF2877 0.39 -0.5
300,265 + GFF2877 0.53 -0.7
300,265 + GFF2877 0.53 -0.3
300,265 + GFF2877 0.53 -1.3
300,265 + GFF2877 0.53 -0.2
300,265 + GFF2877 0.53 +0.2
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 -2.4
300,265 + GFF2877 0.53 -1.5
300,265 + GFF2877 0.53 -0.5
300,265 + GFF2877 0.53 -1.9
300,265 + GFF2877 0.53 +0.4
300,265 + GFF2877 0.53 +0.2
300,265 + GFF2877 0.53 -0.3
300,265 + GFF2877 0.53 +1.2
300,265 + GFF2877 0.53 -0.1
300,265 + GFF2877 0.53 +0.1
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 +0.4
300,265 + GFF2877 0.53 -0.2
300,265 + GFF2877 0.53 -0.5
300,265 + GFF2877 0.53 +0.9
300,266 - GFF2877 0.53 +0.2
300,266 - GFF2877 0.53 -0.5
300,266 - GFF2877 0.53 +1.1
300,266 - GFF2877 0.53 -0.2
300,266 - GFF2877 0.53 -0.2
300,266 - GFF2877 0.53 +0.6
300,266 - GFF2877 0.53 -1.2
300,266 - GFF2877 0.53 -0.6
300,266 - GFF2877 0.53 -0.4
300,266 - GFF2877 0.53 +0.9
300,266 - GFF2877 0.53 -0.3
300,266 - GFF2877 0.53 -1.2
300,266 - GFF2877 0.53 +0.5
300,266 - GFF2877 0.53 -0.6
300,266 - GFF2877 0.53 -0.6
300,266 - GFF2877 0.53 +0.3
300,266 - GFF2877 0.53 -1.2
300,266 - GFF2877 0.53 +0.2
300,266 - GFF2877 0.53 -0.5
300,266 - GFF2877 0.53 -0.1
300,271 + GFF2877 0.54 -0.6
300,271 + GFF2877 0.54 +0.1
300,271 + GFF2877 0.54 -1.8
300,271 + GFF2877 0.54 -0.7
300,271 + GFF2877 0.54 -0.0
300,271 + GFF2877 0.54 -0.6
300,271 + GFF2877 0.54 +0.5
300,271 + GFF2877 0.54 +0.0
300,271 + GFF2877 0.54 +0.1
300,271 + GFF2877 0.54 -0.2
300,271 + GFF2877 0.54 -0.4
300,271 + GFF2877 0.54 -1.7
300,271 + GFF2877 0.54 -0.3
300,271 + GFF2877 0.54 +0.1
300,271 + GFF2877 0.54 +0.9
300,271 + GFF2877 0.54 +0.3
300,271 + GFF2877 0.54 -0.9
300,271 + GFF2877 0.54 +1.3
300,271 + GFF2877 0.54 +0.7
300,271 + GFF2877 0.54 +1.7
300,271 + GFF2877 0.54 -2.1
300,271 + GFF2877 0.54 -0.2
300,271 + GFF2877 0.54 +1.0
300,272 - GFF2877 0.54 -1.1
300,272 - GFF2877 0.54 -0.8
300,272 - GFF2877 0.54 -0.5
300,272 - GFF2877 0.54 +0.4
300,272 - GFF2877 0.54 +1.1
300,272 - GFF2877 0.54 +0.3
300,272 - GFF2877 0.54 -0.5
300,272 - GFF2877 0.54 -0.6
300,272 - GFF2877 0.54 -0.4
300,272 - GFF2877 0.54 -0.3
300,272 - GFF2877 0.54 -0.1
300,272 - GFF2877 0.54 -0.5
300,272 - GFF2877 0.54 +0.3
300,272 - GFF2877 0.54 +1.1
300,273 - GFF2877 0.54 -1.1
300,487 + GFF2877 0.76 +0.4
300,487 + GFF2877 0.76 -0.4
300,488 - GFF2877 0.76 -0.2
300,488 - GFF2877 0.76 -0.6
300,583 + GFF2877 0.86 -0.8
300,583 + GFF2877 0.86 -0.4
300,583 + GFF2877 0.86 -0.3
300,584 - GFF2877 0.87 +1.8
300,584 - GFF2877 0.87 -0.7
300,584 - GFF2877 0.87 +0.0
300,584 - GFF2877 0.87 -0.4
300,584 - GFF2877 0.87 -0.6
300,586 + GFF2877 0.87 +2.1
300,586 + GFF2877 0.87 +0.2
300,586 + GFF2877 0.87 -0.0
300,586 + GFF2877 0.87 +0.5
300,586 + GFF2877 0.87 -0.2
300,586 + GFF2877 0.87 +1.5
300,586 + GFF2877 0.87 +0.6
300,586 + GFF2877 0.87 -0.1
300,586 + GFF2877 0.87 -0.6
300,587 - GFF2877 0.87 -0.3
300,587 - GFF2877 0.87 -1.3
300,587 - GFF2877 0.87 -0.3
300,587 - GFF2877 0.87 -0.7
300,649 - +3.1
300,649 - +0.7
300,649 - -0.6
300,734 + -0.5
300,734 + -0.8
300,734 + -0.3
300,734 + -0.1
300,735 - +0.8
300,735 - -1.7
300,735 - +0.1
300,769 + -1.0
300,769 + -0.5
300,770 - +0.4
300,790 + +0.9
300,790 + +0.1
300,790 + -1.1
300,791 - -0.2
300,791 - -0.5
300,791 - -0.2
300,791 - +0.3
300,791 - +0.5
300,791 - +0.9
300,791 - +0.1
300,791 - -0.1
300,791 - -0.0
302,837 + +1.8
302,838 - -1.5
302,838 - -0.4
302,838 - -0.9
302,839 + -0.2
302,844 + -0.5
302,844 + +0.2
302,844 + +0.5
302,867 + -1.1
302,867 + +1.5
302,925 + +1.8
302,925 + -0.5
302,925 + -0.3
302,948 + -1.8
302,949 - -0.2
303,105 + -0.7
303,116 + -0.3
303,116 + +0.9
303,116 + +0.2
303,116 + +0.2
303,116 + -0.9
303,116 + -2.7
303,116 + -0.1
303,116 + +0.5
303,116 + -0.9
303,116 + -0.5
303,116 + -1.1
303,116 + -0.0
303,116 + -0.9
303,116 + -1.5
303,215 + +0.4
303,215 + +0.1
303,215 + -0.1
303,215 + +0.1
303,215 + +1.7
303,215 + +0.8
303,215 + -2.2
303,215 + -0.8
303,215 + -0.4
303,215 + -0.3
303,215 + +2.5
303,215 + -0.1
303,215 + +1.3
303,215 + +0.3
303,215 + +0.2
303,215 + +0.2

Or see this region's nucleotide sequence