Strain Fitness in Variovorax sp. SCN45 around GFF2869

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2868 and GFF2869 are separated by 29 nucleotidesGFF2869 and GFF2870 are separated by 48 nucleotides GFF2868 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215), at 292,176 to 293,162 GFF2868 GFF2869 - putative anion permease, at 293,192 to 294,604 GFF2869 GFF2870 - Nicotinate phosphoribosyltransferase (EC 6.3.4.21), at 294,653 to 295,873 GFF2870 Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 292.235 kb on - strandat 292.301 kb on + strand, within GFF2868at 292.525 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.636 kb on + strand, within GFF2868at 292.636 kb on + strand, within GFF2868at 292.637 kb on - strand, within GFF2868at 292.637 kb on - strand, within GFF2868at 292.927 kb on + strand, within GFF2868at 292.927 kb on + strand, within GFF2868at 292.928 kb on - strand, within GFF2868at 292.928 kb on - strand, within GFF2868at 292.928 kb on - strand, within GFF2868at 294.613 kb on - strandat 294.617 kb on + strandat 294.617 kb on + strandat 294.618 kb on - strandat 294.618 kb on - strandat 294.645 kb on + strandat 294.645 kb on + strandat 294.645 kb on + strandat 294.693 kb on + strandat 294.694 kb on - strandat 294.694 kb on - strandat 294.694 kb on - strandat 294.702 kb on + strandat 294.702 kb on + strandat 294.702 kb on + strandat 294.703 kb on - strandat 294.703 kb on - strandat 294.703 kb on - strandat 294.703 kb on - strandat 294.703 kb on - strandat 294.703 kb on - strandat 294.804 kb on + strand, within GFF2870at 294.804 kb on + strand, within GFF2870at 294.804 kb on + strand, within GFF2870at 294.873 kb on + strand, within GFF2870at 294.874 kb on - strand, within GFF2870at 294.954 kb on + strand, within GFF2870at 294.954 kb on + strand, within GFF2870at 294.955 kb on - strand, within GFF2870at 294.955 kb on - strand, within GFF2870at 294.955 kb on - strand, within GFF2870at 294.955 kb on - strand, within GFF2870at 295.032 kb on + strand, within GFF2870at 295.032 kb on + strand, within GFF2870at 295.032 kb on + strand, within GFF2870at 295.032 kb on + strand, within GFF2870at 295.032 kb on + strand, within GFF2870at 295.032 kb on + strand, within GFF2870at 295.033 kb on - strand, within GFF2870at 295.033 kb on - strand, within GFF2870at 295.033 kb on - strand, within GFF2870at 295.033 kb on - strand, within GFF2870at 295.033 kb on - strand, within GFF2870at 295.068 kb on + strand, within GFF2870at 295.068 kb on + strand, within GFF2870at 295.069 kb on - strand, within GFF2870at 295.069 kb on - strand, within GFF2870at 295.069 kb on - strand, within GFF2870at 295.105 kb on - strand, within GFF2870at 295.182 kb on + strand, within GFF2870at 295.182 kb on + strand, within GFF2870at 295.182 kb on + strand, within GFF2870at 295.183 kb on - strand, within GFF2870at 295.230 kb on + strand, within GFF2870at 295.230 kb on + strand, within GFF2870at 295.230 kb on + strand, within GFF2870at 295.230 kb on + strand, within GFF2870at 295.230 kb on + strand, within GFF2870at 295.230 kb on + strand, within GFF2870at 295.231 kb on - strand, within GFF2870at 295.231 kb on - strand, within GFF2870at 295.231 kb on - strand, within GFF2870at 295.231 kb on - strand, within GFF2870at 295.231 kb on - strand, within GFF2870at 295.231 kb on - strand, within GFF2870at 295.231 kb on - strand, within GFF2870at 295.378 kb on - strand, within GFF2870at 295.437 kb on - strand, within GFF2870at 295.488 kb on + strand, within GFF2870at 295.488 kb on + strand, within GFF2870at 295.489 kb on - strand, within GFF2870at 295.489 kb on - strand, within GFF2870at 295.489 kb on - strand, within GFF2870at 295.489 kb on - strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.599 kb on + strand, within GFF2870at 295.600 kb on - strand, within GFF2870at 295.600 kb on - strand, within GFF2870at 295.600 kb on - strand, within GFF2870at 295.600 kb on - strand, within GFF2870at 295.600 kb on - strand, within GFF2870

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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292,235 - -1.0
292,301 + GFF2868 0.13 -0.1
292,525 + GFF2868 0.35 -0.3
292,582 + GFF2868 0.41 -0.1
292,582 + GFF2868 0.41 -1.2
292,582 + GFF2868 0.41 -0.2
292,582 + GFF2868 0.41 +0.3
292,583 - GFF2868 0.41 -1.1
292,583 - GFF2868 0.41 +0.1
292,583 - GFF2868 0.41 -0.3
292,583 - GFF2868 0.41 +0.1
292,583 - GFF2868 0.41 +0.4
292,583 - GFF2868 0.41 -0.2
292,583 - GFF2868 0.41 -0.0
292,636 + GFF2868 0.47 -0.1
292,636 + GFF2868 0.47 -0.8
292,637 - GFF2868 0.47 -0.2
292,637 - GFF2868 0.47 -2.8
292,927 + GFF2868 0.76 -0.6
292,927 + GFF2868 0.76 -1.3
292,928 - GFF2868 0.76 +0.4
292,928 - GFF2868 0.76 +1.9
292,928 - GFF2868 0.76 -0.7
294,613 - +0.0
294,617 + -0.8
294,617 + +0.1
294,618 - +0.5
294,618 - +0.7
294,645 + -0.2
294,645 + -2.7
294,645 + -0.1
294,693 + +0.4
294,694 - -0.0
294,694 - +0.3
294,694 - -1.4
294,702 + +0.5
294,702 + +0.0
294,702 + +0.3
294,703 - -0.2
294,703 - +1.8
294,703 - +0.5
294,703 - -0.2
294,703 - -0.1
294,703 - -0.8
294,804 + GFF2870 0.12 -2.2
294,804 + GFF2870 0.12 -0.2
294,804 + GFF2870 0.12 +0.8
294,873 + GFF2870 0.18 +0.5
294,874 - GFF2870 0.18 -1.2
294,954 + GFF2870 0.25 +0.4
294,954 + GFF2870 0.25 +0.0
294,955 - GFF2870 0.25 -1.3
294,955 - GFF2870 0.25 -1.1
294,955 - GFF2870 0.25 -0.5
294,955 - GFF2870 0.25 -0.5
295,032 + GFF2870 0.31 -0.4
295,032 + GFF2870 0.31 +0.7
295,032 + GFF2870 0.31 +0.2
295,032 + GFF2870 0.31 -1.8
295,032 + GFF2870 0.31 -0.1
295,032 + GFF2870 0.31 -1.0
295,033 - GFF2870 0.31 -1.0
295,033 - GFF2870 0.31 -0.2
295,033 - GFF2870 0.31 -0.7
295,033 - GFF2870 0.31 -1.5
295,033 - GFF2870 0.31 -0.8
295,068 + GFF2870 0.34 -1.0
295,068 + GFF2870 0.34 -0.1
295,069 - GFF2870 0.34 -0.7
295,069 - GFF2870 0.34 -0.8
295,069 - GFF2870 0.34 -0.2
295,105 - GFF2870 0.37 -1.2
295,182 + GFF2870 0.43 -0.9
295,182 + GFF2870 0.43 -1.2
295,182 + GFF2870 0.43 -0.1
295,183 - GFF2870 0.43 -0.8
295,230 + GFF2870 0.47 -0.5
295,230 + GFF2870 0.47 -2.7
295,230 + GFF2870 0.47 -0.5
295,230 + GFF2870 0.47 -0.2
295,230 + GFF2870 0.47 -1.2
295,230 + GFF2870 0.47 -0.3
295,231 - GFF2870 0.47 -0.5
295,231 - GFF2870 0.47 +0.5
295,231 - GFF2870 0.47 -0.0
295,231 - GFF2870 0.47 +0.2
295,231 - GFF2870 0.47 -0.2
295,231 - GFF2870 0.47 +0.0
295,231 - GFF2870 0.47 -0.5
295,378 - GFF2870 0.59 -0.5
295,437 - GFF2870 0.64 +0.8
295,488 + GFF2870 0.68 -0.5
295,488 + GFF2870 0.68 -0.3
295,489 - GFF2870 0.68 -0.1
295,489 - GFF2870 0.68 -1.5
295,489 - GFF2870 0.68 -1.8
295,489 - GFF2870 0.68 -2.9
295,599 + GFF2870 0.77 -0.6
295,599 + GFF2870 0.77 +0.3
295,599 + GFF2870 0.77 +0.7
295,599 + GFF2870 0.77 -0.3
295,599 + GFF2870 0.77 +0.8
295,599 + GFF2870 0.77 +0.7
295,599 + GFF2870 0.77 -0.5
295,599 + GFF2870 0.77 -0.6
295,600 - GFF2870 0.78 -0.5
295,600 - GFF2870 0.78 +0.3
295,600 - GFF2870 0.78 -0.3
295,600 - GFF2870 0.78 -1.3
295,600 - GFF2870 0.78 +0.1

Or see this region's nucleotide sequence