Strain Fitness in Variovorax sp. SCN45 around GFF257

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF256 and GFF257 are separated by 16 nucleotidesGFF257 and GFF258 overlap by 4 nucleotides GFF256 - Twitching motility protein PilT, at 287,919 to 289,067 GFF256 GFF257 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 289,084 to 290,265 GFF257 GFF258 - Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298), at 290,262 to 291,140 GFF258 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.168 kb on - strand, within GFF256at 288.168 kb on - strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.357 kb on + strand, within GFF256at 288.357 kb on + strand, within GFF256at 288.409 kb on - strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.571 kb on - strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.622 kb on - strand, within GFF256at 288.622 kb on - strand, within GFF256at 288.651 kb on + strand, within GFF256at 288.651 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.689 kb on - strand, within GFF256at 288.689 kb on - strand, within GFF256at 288.689 kb on - strand, within GFF256at 289.065 kb on + strandat 289.065 kb on + strandat 290.499 kb on + strand, within GFF258at 290.499 kb on + strand, within GFF258at 290.499 kb on + strand, within GFF258at 290.500 kb on - strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.608 kb on - strand, within GFF258at 290.608 kb on - strand, within GFF258at 290.688 kb on + strand, within GFF258at 290.689 kb on - strand, within GFF258at 290.826 kb on + strand, within GFF258at 290.826 kb on + strand, within GFF258at 290.827 kb on - strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.854 kb on - strand, within GFF258at 290.854 kb on - strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.225 kb on + strandat 291.225 kb on + strandat 291.226 kb on - strandat 291.247 kb on + strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
288,162 + GFF256 0.21 +1.2
288,162 + GFF256 0.21 -0.9
288,162 + GFF256 0.21 +1.4
288,162 + GFF256 0.21 +0.3
288,162 + GFF256 0.21 -1.1
288,163 - GFF256 0.21 +1.0
288,163 - GFF256 0.21 -0.5
288,163 - GFF256 0.21 -0.4
288,163 - GFF256 0.21 +0.0
288,163 - GFF256 0.21 -0.9
288,163 - GFF256 0.21 -0.0
288,163 - GFF256 0.21 -1.5
288,163 - GFF256 0.21 -0.1
288,168 - GFF256 0.22 -1.3
288,168 - GFF256 0.22 -1.8
288,195 + GFF256 0.24 +0.4
288,195 + GFF256 0.24 -0.2
288,195 + GFF256 0.24 +0.2
288,195 + GFF256 0.24 -1.6
288,195 + GFF256 0.24 +1.2
288,195 + GFF256 0.24 -0.6
288,195 + GFF256 0.24 -0.7
288,196 - GFF256 0.24 -0.7
288,196 - GFF256 0.24 -0.6
288,196 - GFF256 0.24 +1.1
288,196 - GFF256 0.24 -0.0
288,213 + GFF256 0.26 +0.3
288,213 + GFF256 0.26 -0.4
288,213 + GFF256 0.26 +0.3
288,213 + GFF256 0.26 +0.2
288,214 - GFF256 0.26 +0.5
288,214 - GFF256 0.26 +0.1
288,214 - GFF256 0.26 -0.8
288,214 - GFF256 0.26 -0.5
288,214 - GFF256 0.26 +0.2
288,357 + GFF256 0.38 +0.2
288,357 + GFF256 0.38 -0.3
288,409 - GFF256 0.43 -0.8
288,417 + GFF256 0.43 +0.9
288,417 + GFF256 0.43 +0.5
288,417 + GFF256 0.43 +1.0
288,417 + GFF256 0.43 -1.5
288,417 + GFF256 0.43 -1.5
288,418 - GFF256 0.43 -0.1
288,418 - GFF256 0.43 +0.3
288,418 - GFF256 0.43 -0.3
288,418 - GFF256 0.43 -0.3
288,418 - GFF256 0.43 -0.8
288,418 - GFF256 0.43 -0.3
288,418 - GFF256 0.43 -1.1
288,418 - GFF256 0.43 -0.8
288,418 - GFF256 0.43 +0.8
288,418 - GFF256 0.43 -2.4
288,418 - GFF256 0.43 +0.6
288,418 - GFF256 0.43 +0.7
288,570 + GFF256 0.57 -0.5
288,570 + GFF256 0.57 -0.9
288,570 + GFF256 0.57 -0.7
288,570 + GFF256 0.57 -0.4
288,571 - GFF256 0.57 -1.1
288,621 + GFF256 0.61 -0.2
288,621 + GFF256 0.61 +0.2
288,621 + GFF256 0.61 -1.2
288,621 + GFF256 0.61 -0.5
288,622 - GFF256 0.61 -1.4
288,622 - GFF256 0.61 -0.1
288,651 + GFF256 0.64 +0.6
288,651 + GFF256 0.64 +1.2
288,688 + GFF256 0.67 +0.7
288,688 + GFF256 0.67 -1.2
288,688 + GFF256 0.67 +0.4
288,688 + GFF256 0.67 -0.6
288,689 - GFF256 0.67 -0.9
288,689 - GFF256 0.67 +0.7
288,689 - GFF256 0.67 -0.2
289,065 + +0.9
289,065 + +0.1
290,499 + GFF258 0.27 +0.2
290,499 + GFF258 0.27 -0.7
290,499 + GFF258 0.27 +0.0
290,500 - GFF258 0.27 -2.2
290,538 + GFF258 0.31 -0.0
290,538 + GFF258 0.31 -0.6
290,538 + GFF258 0.31 +0.2
290,538 + GFF258 0.31 +1.5
290,538 + GFF258 0.31 +0.2
290,538 + GFF258 0.31 -0.7
290,538 + GFF258 0.31 +0.3
290,538 + GFF258 0.31 -0.4
290,538 + GFF258 0.31 +0.1
290,538 + GFF258 0.31 -0.3
290,538 + GFF258 0.31 +0.3
290,539 - GFF258 0.32 -1.0
290,539 - GFF258 0.32 +0.6
290,539 - GFF258 0.32 -1.1
290,539 - GFF258 0.32 +0.1
290,539 - GFF258 0.32 -0.2
290,539 - GFF258 0.32 -0.8
290,608 - GFF258 0.39 +0.5
290,608 - GFF258 0.39 +0.4
290,688 + GFF258 0.48 +0.3
290,689 - GFF258 0.49 -1.8
290,826 + GFF258 0.64 -0.1
290,826 + GFF258 0.64 -0.7
290,827 - GFF258 0.64 -0.2
290,853 + GFF258 0.67 -0.1
290,853 + GFF258 0.67 +0.2
290,853 + GFF258 0.67 -1.7
290,853 + GFF258 0.67 +0.2
290,853 + GFF258 0.67 -0.1
290,853 + GFF258 0.67 -0.2
290,853 + GFF258 0.67 -1.0
290,853 + GFF258 0.67 +0.1
290,854 - GFF258 0.67 -1.6
290,854 - GFF258 0.67 -1.6
291,027 + GFF258 0.87 +0.3
291,027 + GFF258 0.87 +0.1
291,027 + GFF258 0.87 -0.5
291,028 - GFF258 0.87 -0.9
291,028 - GFF258 0.87 -0.2
291,028 - GFF258 0.87 -0.5
291,028 - GFF258 0.87 -0.4
291,028 - GFF258 0.87 -0.5
291,028 - GFF258 0.87 +0.1
291,028 - GFF258 0.87 +0.1
291,225 + -0.4
291,225 + -1.7
291,226 - +0.1
291,247 + +0.1
291,248 - +1.7
291,248 - +1.4
291,248 - -0.6
291,248 - +0.8
291,248 - -0.4

Or see this region's nucleotide sequence