Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2483 and GFF2484 overlap by 1 nucleotides GFF2484 and GFF2485 are separated by 13 nucleotides GFF2485 and GFF2486 are separated by 25 nucleotides GFF2486 and GFF2487 are separated by 104 nucleotides
GFF2483 - Urease alpha subunit (EC 3.5.1.5), at 540,349 to 542,067
GFF2483
GFF2484 - Urease beta subunit (EC 3.5.1.5), at 542,067 to 542,372
GFF2484
GFF2485 - Nickel-binding accessory protein UreJ-HupE, at 542,386 to 542,985
GFF2485
GFF2486 - Urease gamma subunit (EC 3.5.1.5), at 543,011 to 543,313
GFF2486
GFF2487 - Two-component system sensor histidine kinase/response regulator hybrid, at 543,418 to 547,056
GFF2487
Position (kb) 542
543 Strain fitness (log2 ratio) -1
0
1 at 541.941 kb on - strand at 541.961 kb on + strand at 541.961 kb on + strand at 542.005 kb on + strand at 542.043 kb on - strand at 542.255 kb on - strand, within GFF2484 at 542.255 kb on - strand, within GFF2484 at 543.219 kb on + strand, within GFF2486 at 543.401 kb on + strand at 543.502 kb on + strand at 543.503 kb on - strand at 543.538 kb on + strand at 543.538 kb on + strand at 543.539 kb on - strand at 543.539 kb on - strand at 543.539 kb on - strand at 543.539 kb on - strand at 543.550 kb on + strand at 543.661 kb on + strand at 543.661 kb on + strand at 543.662 kb on - strand at 543.662 kb on - strand at 543.662 kb on - strand at 543.740 kb on - strand at 543.740 kb on - strand at 543.827 kb on - strand, within GFF2487 at 543.827 kb on - strand, within GFF2487 at 543.827 kb on - strand, within GFF2487 at 543.827 kb on - strand, within GFF2487 at 543.878 kb on - strand, within GFF2487 at 543.919 kb on + strand, within GFF2487 at 543.920 kb on - strand, within GFF2487 at 543.920 kb on - strand, within GFF2487
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 541,941 - -0.3 541,961 + -1.5 541,961 + -0.1 542,005 + +0.4 542,043 - +0.1 542,255 - GFF2484 0.61 -0.6 542,255 - GFF2484 0.61 -0.2 543,219 + GFF2486 0.69 +0.1 543,401 + +0.1 543,502 + +0.1 543,503 - +0.5 543,538 + -0.1 543,538 + +0.6 543,539 - +0.8 543,539 - +0.2 543,539 - +1.6 543,539 - +0.9 543,550 + -0.5 543,661 + -0.2 543,661 + -0.2 543,662 - +0.8 543,662 - -0.0 543,662 - -0.6 543,740 - +0.3 543,740 - -0.1 543,827 - GFF2487 0.11 +1.2 543,827 - GFF2487 0.11 +0.8 543,827 - GFF2487 0.11 -0.3 543,827 - GFF2487 0.11 +1.4 543,878 - GFF2487 0.13 +0.4 543,919 + GFF2487 0.14 +0.2 543,920 - GFF2487 0.14 -0.4 543,920 - GFF2487 0.14 -0.6
Or see this region's nucleotide sequence